SMTL ID : 2o8q.1

CRYSTAL STRUCTURE OF A PROTEIN WITH A CUPIN-LIKE FOLD AND UNKNOWN FUNCTION (BXE_C0505) FROM BURKHOLDERIA XENOVORANS LB400 AT 1.55 A RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-tetramer

Ligands

4 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 3 residues within 4Å: Chain A: H.59, H.61, H.101 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.59, A:H.61, A:H.101, H2O.2, H2O.2, H2O.3 NI.6: 3 residues within 4Å: Chain B: H.59, H.61, H.101 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.59, B:H.61, B:H.101, H2O.7, H2O.8, H2O.9 NI.11: 3 residues within 4Å: Chain C: H.59, H.61, H.101 6 PLIP interactions: 3 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:H.59, C:H.61, C:H.101, H2O.11, H2O.11, H2O.12 NI.16: 3 residues within 4Å: Chain D: H.59, H.61, H.101 6 PLIP interactions: 3 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:H.59, D:H.61, D:H.101, H2O.16, H2O.17, H2O.18

16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: T.57, H.59, T.123, V.125 Ligand excluded by PLIP EDO.3: 6 residues within 4Å: Chain A: G.15, S.16, G.17, F.18 Chain B: E.27, R.47 Ligand excluded by PLIP EDO.4: 7 residues within 4Å: Chain A: S.117 Chain B: F.41 Chain C: F.41 Chain D: G.64, F.65, S.117 Ligands: EDO.14 Ligand excluded by PLIP EDO.5: 4 residues within 4Å: Chain A: T.6, T.7, I.8, I.82 Ligand excluded by PLIP EDO.7: 3 residues within 4Å: Chain B: F.26, F.68, F.77 Ligand excluded by PLIP EDO.8: 4 residues within 4Å: Chain B: E.24, F.25, F.26, Y.28 Ligand excluded by PLIP EDO.9: 4 residues within 4Å: Chain B: S.16, G.17, F.18, D.19 Ligand excluded by PLIP EDO.10: 4 residues within 4Å: Chain A: E.35, A.36 Chain B: Q.5, T.7 Ligand excluded by PLIP EDO.12: 4 residues within 4Å: Chain C: T.57, H.59, T.123, V.125 Ligand excluded by PLIP EDO.13: 6 residues within 4Å: Chain C: G.15, S.16, G.17, F.18 Chain D: E.27, R.47 Ligand excluded by PLIP EDO.14: 7 residues within 4Å: Chain A: F.41 Chain B: G.64, F.65, S.117 Chain C: S.117 Chain D: F.41 Ligands: EDO.4 Ligand excluded by PLIP EDO.15: 4 residues within 4Å: Chain C: T.6, T.7, I.8, I.82 Ligand excluded by PLIP EDO.17: 3 residues within 4Å: Chain D: F.26, F.68, F.77 Ligand excluded by PLIP EDO.18: 4 residues within 4Å: Chain D: E.24, F.25, F.26, Y.28 Ligand excluded by PLIP EDO.19: 4 residues within 4Å: Chain D: S.16, G.17, F.18, D.19 Ligand excluded by PLIP EDO.20: 4 residues within 4Å: Chain C: E.35, A.36 Chain D: Q.5, T.7 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of hypothetical protein (YP_555756.1) from Burkholderia xenovorans LB400 at 1.55 A resolution. To be published

Release Date

2006-12-26

Peptides

Hypothetical protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Hypothetical protein