SMTL ID : 2o8u.1

Crystal Structure and Binding Epitopes of Urokinase-type Plasminogen Activator (C122A/N145Q/S195A) in complex with Inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: H.46, Q.195, G.196, D.197, A.198, S.217 Ligands: BEN.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.196, A:D.197, A:A.198 Salt bridges: A:H.46

2 x BEN: BENZAMIDINE(Non-functional Binders)

BEN.2: 11 residues within 4Å: Chain A: D.192, S.193, C.194, Q.195, V.216, W.218, G.219, G.221, C.222, G.229 Ligands: SO4.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.216 Hydrogen bonds: A:D.192, A:S.193, A:G.221 BEN.3: 6 residues within 4Å: Chain A: F.131, I.162, S.163, H.164, L.182, R.233 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:H.164 Hydrogen bonds: A:F.131

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.4: 4 residues within 4Å: Chain A: N.67, Y.148, L.149, Y.150 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.67

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 4 residues within 4Å: Chain A: S.64, R.65, T.70, Q.71 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, G. et al., Crystal Structure and Binding Epitopes of Urokinase-type Plasminogen Activator (C122A/N145Q/S195A) in complex with Inhibitors. To be Published

Release Date

2007-12-25

Peptides

Urokinase plasminogen activator: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Urokinase plasminogen activator

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