SMTL ID : 2oa5.1

Crystal structure of ORF52 from Murid herpesvirus (MUHV-4) (Murine gammaherpesvirus 68) at 2.1 A resolution. Northeast Structural Genomics Consortium target MHR28B.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

4 x PE5: 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL(Non-covalent)

PE5.1: 16 residues within 4Å: Chain A: V.17, E.18, K.21, A.46, A.47, K.48, S.51, I.52, S.55, S.56 Chain B: T.86, L.89, Q.90 Chain D: E.12, M.13, E.16 10 PLIP interactions: 6 interactions with chain A, 2 interactions with chain D, 2 interactions with chain B Hydrophobic interactions: A:E.18, B:T.86, B:L.89 Hydrogen bonds: A:K.21, A:S.51, A:S.55, A:S.56 Water bridges: A:A.47, D:E.12, D:R.19 PE5.2: 7 residues within 4Å: Chain B: K.25, K.28, Q.29, K.32, S.33, I.43, T.45 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.32, B:S.33 PE5.3: 16 residues within 4Å: Chain B: E.12, M.13, E.16 Chain C: V.17, E.18, K.21, A.46, A.47, K.48, S.51, I.52, S.55, S.56 Chain D: T.86, L.89, Q.90 10 PLIP interactions: 2 interactions with chain D, 6 interactions with chain C, 2 interactions with chain B Hydrophobic interactions: D:T.86, D:L.89, C:E.18 Hydrogen bonds: C:K.21, C:S.51, C:S.55, C:S.56 Water bridges: C:A.47, B:E.16, B:R.19 PE5.4: 7 residues within 4Å: Chain D: K.25, K.28, Q.29, K.32, S.33, I.43, T.45 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:K.32, D:S.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Benach, J. et al., Structural and functional studies of the abundant tegument protein ORF52 from murine gammaherpesvirus 68. J.Biol.Chem. (2007)

Release Date

2007-01-30

Peptides

Hypothetical protein BQLF2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Hypothetical protein BQLF2

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