SMTL ID : 2obc.1

The crystal structure of RibD from Escherichia coli in complex with a substrate analogue, ribose 5-phosphate (beta form), bound to the active site of the reductase domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

1 x RP5: 5-O-phosphono-beta-D-ribofuranose(Non-covalent)

RP5.1: 12 residues within 4Å: Chain A: E.194, S.195, W.197, R.211, T.223, D.227, P.229, A.230, L.231, T.232, R.234, E.326 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:S.195, A:R.211, A:D.227, A:A.230, A:L.231, A:T.232, A:T.232, A:E.326, A:E.326 Salt bridges: A:R.211, A:R.234

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stenmark, P. et al., The crystal structure of the bifunctional deaminase/reductase RibD of the riboflavin biosynthetic pathway in Escherichia coli: implications for the reductive mechanism. J.Mol.Biol. (2007)

Release Date

2007-02-13

Peptides

Riboflavin biosynthesis protein ribD: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Riboflavin biosynthesis protein ribD

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