SMTL ID : 2ocb.1

Crystal structure of human RAB9B in complex with a GTP analogue

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: S.21, T.39, D.62 Ligands: GNP.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.21, A:T.39, H2O.1, H2O.1

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.2: 25 residues within 4Å: Chain A: D.15, G.16, G.17, V.18, G.19, K.20, S.21, S.22, F.32, D.33, S.34, A.36, H.38, T.39, T.63, A.64, G.65, N.124, K.125, D.127, K.128, S.154, A.155, K.156 Ligands: MG.1 29 PLIP interactions: 29 interactions with chain A Hydrogen bonds: A:G.17, A:V.18, A:G.19, A:K.20, A:K.20, A:S.21, A:S.22, A:S.22, A:D.33, A:A.36, A:T.39, A:T.39, A:T.63, A:G.65, A:N.124, A:K.125, A:K.125, A:A.155, A:K.156 Water bridges: A:S.21, A:S.21, A:T.39, A:T.39, A:Q.66, A:Q.66, A:K.128 Salt bridges: A:D.127 pi-Stacking: A:F.32, A:F.32

7 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.3: 1 residues within 4Å: Chain A: R.47 No protein-ligand interaction detected (PLIP) UNX.4: 4 residues within 4Å: Chain A: V.126, D.127, D.157, T.159 No protein-ligand interaction detected (PLIP) UNX.5: 3 residues within 4Å: Chain A: T.134, T.135, E.136 No protein-ligand interaction detected (PLIP) UNX.6: 4 residues within 4Å: Chain A: N.160, V.161, T.162, V.163 No protein-ligand interaction detected (PLIP) UNX.7: 2 residues within 4Å: Chain A: E.67, R.68 No protein-ligand interaction detected (PLIP) UNX.8: 2 residues within 4Å: Chain A: W.101, E.104 No protein-ligand interaction detected (PLIP) UNX.9: 2 residues within 4Å: Chain A: M.143, D.147 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hong, B. et al., Crystal structure of human RAB9B in complex with a GTP analogue. To be Published

Release Date

2007-01-02

Peptides

Ras-related protein Rab-9B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ras-related protein Rab-9B