SMTL ID : 2ocd.1

Crystal structure of L-asparaginase I from Vibrio cholerae O1 biovar eltor str. N16961

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

homo-tetramer

Ligands

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 7 residues within 4Å: Chain A: G.13, T.14, D.59, S.60, G.90, T.91, D.92 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.14, A:T.14, A:S.60, A:S.60, A:T.91, A:D.92 ACT.2: 2 residues within 4Å: Chain B: H.52, Y.54 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:H.52 ACT.3: 6 residues within 4Å: Chain B: G.13, T.14, S.60, G.90, T.91, D.92 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:T.14, B:T.14, B:S.60, B:T.91, B:T.91, B:D.92, B:D.92 Water bridges: B:S.60 ACT.4: 5 residues within 4Å: Chain C: T.14, S.60, G.90, T.91, D.92 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:T.14, C:T.91, C:D.92, C:D.92 Water bridges: C:S.60

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 6 residues within 4Å: Chain D: G.13, T.14, S.60, G.90, T.91, D.92 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:T.14, D:T.14, D:S.60, D:S.60, D:T.91, D:D.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nocek, B. et al., Crystal structure of L-asparaginase I from Vibrio cholerae O1 biovar eltor str. N16961. To be Published

Release Date

2007-01-30

Peptides

L-asparaginase I: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

L-asparaginase I