SMTL ID : 2oci.1

Crystal structure of valacyclovir hydrolase complexed with a product analogue

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: H.15, E.37, D.58, H.64 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.15, A:E.37, A:D.58, A:H.64, H2O.5

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 1 residues within 4Å: Chain A: D.184 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.184, H2O.6, H2O.9

1 x TYC: L-TYROSINAMIDE(Non-covalent)

TYC.3: 12 residues within 4Å: Chain A: G.31, M.32, S.102, D.103, D.135, I.138, Y.139, I.142, W.172, L.209, V.210, H.235 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.138, A:Y.139, A:I.142, A:W.172, A:V.210 Hydrogen bonds: A:M.32, A:S.102, A:D.103, A:D.103, A:L.209 Water bridges: A:M.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lai, L. et al., Molecular basis of prodrug activation by human valacyclovirase, an alpha-amino acid ester hydrolase. J.Biol.Chem. (2008)

Release Date

2008-02-05

Peptides

Valacyclovir hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Valacyclovir hydrolase

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