SMTL ID : 2ocv.2 (1 other biounit)

Structural basis of Na+ activation mimicry in murine thrombin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-2-2-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain B: P.48, N.53 Ligands: NAG.2, NAG.4 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 4 residues within 4Å: Chain D: P.48, N.53 Ligands: NAG.7, NAG.9 No protein-ligand interaction detected (PLIP)

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-functional Binders)(Post Translational Modification)

NAG.2: 2 residues within 4Å: Ligands: NAG-NAG.1, NAG.3 No protein-ligand interaction detected (PLIP) NAG.3: 2 residues within 4Å: Ligands: NAG.2, NAG.4 No protein-ligand interaction detected (PLIP) NAG.4: 2 residues within 4Å: Ligands: NAG-NAG.1, NAG.3 No protein-ligand interaction detected (PLIP) NAG.5: 2 residues within 4Å: Chain B: N.193 Ligands: NAG.10 No protein-ligand interaction detected (PLIP) NAG.7: 2 residues within 4Å: Ligands: NAG-NAG.6, NAG.8 No protein-ligand interaction detected (PLIP) NAG.8: 2 residues within 4Å: Ligands: NAG.7, NAG.9 No protein-ligand interaction detected (PLIP) NAG.9: 2 residues within 4Å: Ligands: NAG-NAG.6, NAG.8 No protein-ligand interaction detected (PLIP) NAG.10: 2 residues within 4Å: Chain D: N.193 Ligands: NAG.5 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marino, F. et al., Structural basis of na+ activation mimicry in murine thrombin. J.Biol.Chem. (2007)

Release Date

2007-04-10

Peptides

Thrombin: AC
Thrombin: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Thrombin

Thrombin

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