SMTL ID : 2ocz.1

The Structure of a Putative 3-Dehydroquinate Dehydratase from Streptococcus pyogenes.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 1 residues within 4Å: Chain A: N.92 No protein-ligand interaction detected (PLIP) MG.6: 1 residues within 4Å: Chain B: N.92 No protein-ligand interaction detected (PLIP)

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: F.107, Q.108, L.111, L.140 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.108 Water bridges: A:Y.100, A:Y.100 EDO.3: 5 residues within 4Å: Chain A: L.111, D.112, F.113, P.114, A.141 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.112, A:A.141 EDO.4: 5 residues within 4Å: Chain A: M.181, G.182, R.189, G.211, Q.212 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.182, A:R.189, A:G.211, A:G.211, A:Q.212, A:Q.212 Water bridges: A:R.189 EDO.5: 5 residues within 4Å: Chain A: F.101, Y.120, P.127, N.129, A.133 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.129, A:N.129 Water bridges: A:N.122 EDO.7: 4 residues within 4Å: Chain B: F.107, Q.108, L.111, L.140 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.108 EDO.8: 5 residues within 4Å: Chain B: L.111, D.112, F.113, P.114, A.141 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.112, B:A.141 EDO.9: 5 residues within 4Å: Chain B: M.181, G.182, R.189, G.211, Q.212 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:G.182, B:R.189, B:G.211, B:G.211, B:Q.212, B:Q.212 Water bridges: B:R.189 EDO.10: 5 residues within 4Å: Chain B: F.101, Y.120, P.127, N.129, A.133 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.129, B:N.129 Water bridges: B:Y.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cuff, M.E. et al., The Structure of a Putative 3-Dehydroquinate Dehydratase from Streptococcus pyogenes. TO BE PUBLISHED

Release Date

2007-01-23

Peptides

3-dehydroquinate dehydratase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

3-dehydroquinate dehydratase