SMTL ID : 2odj.1 (1 other biounit)

Crystal structure of the outer membrane protein OprD from Pseudomonas aeruginosa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

6 x C8E: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE(Non-functional Binders)

C8E.1: 3 residues within 4Å: Chain A: F.231, A.258 Ligands: C8E.6 No protein-ligand interaction detected (PLIP) C8E.2: 6 residues within 4Å: Chain A: F.13, I.14, E.15, Y.50, A.65, L.420 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.14, A:E.15, A:L.420, A:L.420 C8E.3: 4 residues within 4Å: Chain A: V.329, L.332, Y.376, F.409 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.329, A:L.332, A:Y.376, A:Y.376, A:Y.376 C8E.4: 5 residues within 4Å: Chain A: H.265, Y.320, V.336, W.394 Ligands: C8E.5 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.320 C8E.5: 11 residues within 4Å: Chain A: F.267, T.268, L.269, A.318, R.319, Y.320, Y.338, H.368, T.370 Ligands: C8E.4, C8E.6 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.338 C8E.6: 5 residues within 4Å: Chain A: Y.260, W.316, Y.338 Ligands: C8E.1, C8E.5 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.260

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Biswas, S. et al., Structural insight into OprD substrate specificity. Nat.Struct.Mol.Biol. (2007)

Release Date

2007-10-16

Peptides

Porin D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Porin D

Related Entries With Identical Sequence