SMTL ID : 2odk.3 (2 other biounits)

Putative prevent-host-death protein from Nitrosomonas europaea

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-octamer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain B: P.42, I.43, G.44, E.45, R.48 Chain E: R.33 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain E Hydrogen bonds: B:G.44, B:E.45 Water bridges: B:R.48 Salt bridges: B:R.48, E:R.33 SO4.2: 6 residues within 4Å: Chain D: P.42, I.43, G.44, E.45, R.48 Chain G: R.33 6 PLIP interactions: 5 interactions with chain D, 1 interactions with chain G Hydrogen bonds: D:G.44, D:E.45 Water bridges: D:E.45, D:R.48 Salt bridges: D:R.48, G:R.33 SO4.3: 6 residues within 4Å: Chain E: P.42, I.43, G.44, E.45, R.48 Chain H: R.33 6 PLIP interactions: 4 interactions with chain E, 2 interactions with chain H Hydrogen bonds: E:G.44, E:E.45 Water bridges: E:R.48, H:R.33 Salt bridges: E:R.48, H:R.33 SO4.5: 6 residues within 4Å: Chain F: R.33 Chain G: P.42, I.43, G.44, E.45, R.48 6 PLIP interactions: 4 interactions with chain G, 2 interactions with chain F Hydrogen bonds: G:G.44, G:E.45 Water bridges: G:R.48, F:R.33 Salt bridges: G:R.48, F:R.33

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 3 residues within 4Å: Chain A: R.33 Chain F: G.44, R.48 3 PLIP interactions: 2 interactions with chain F, 1 interactions with chain A Hydrogen bonds: F:R.48, F:R.48, A:R.33 GOL.6: 3 residues within 4Å: Chain C: R.33 Chain H: G.44, R.48 3 PLIP interactions: 2 interactions with chain H, 1 interactions with chain C Hydrogen bonds: H:R.48, H:R.48, C:R.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Osipiuk, J. et al., Crsytal structure of putative prevent-host-death protein from Nitrosomonas europaea. To be Published

Release Date

2007-01-23

Peptides

Hypothetical protein: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
C

F
D

G
C

H
D

Hypothetical protein

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