SMTL ID : 2of9.1

Crystal structure of apo AVR4 (D39A/C122S)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

homo-tetramer

Ligands

30 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 5 residues within 4Å: Chain A: A.38, W.68, F.70, S.71, S.73 Ligand excluded by PLIP FMT.2: 3 residues within 4Å: Chain A: W.68, T.75, L.97 Ligand excluded by PLIP FMT.3: 4 residues within 4Å: Chain A: H.54, K.55, R.56 Chain B: H.67 Ligand excluded by PLIP FMT.4: 3 residues within 4Å: Chain A: S.105, Y.106 Ligands: FMT.29 Ligand excluded by PLIP FMT.5: 4 residues within 4Å: Chain A: V.101, N.102, Y.106, K.109 Ligand excluded by PLIP FMT.6: 3 residues within 4Å: Chain A: K.88, T.119, R.120 Ligand excluded by PLIP FMT.7: 3 residues within 4Å: Chain A: E.28 Chain B: T.30, L.50 Ligand excluded by PLIP FMT.8: 6 residues within 4Å: Chain B: A.38, A.39, W.68, F.70, S.71, S.73 Ligand excluded by PLIP FMT.9: 4 residues within 4Å: Chain B: W.68, T.75, W.95, L.97 Ligand excluded by PLIP FMT.10: 5 residues within 4Å: Chain A: Q.59, F.82, I.83 Chain B: D.103, I.104 Ligand excluded by PLIP FMT.11: 4 residues within 4Å: Chain A: H.67 Chain B: H.54, K.55, R.56 Ligand excluded by PLIP FMT.12: 6 residues within 4Å: Chain B: G.31, T.32, L.46, S.47, P.48, N.69 Ligand excluded by PLIP FMT.13: 5 residues within 4Å: Chain A: D.103, I.104 Chain B: Q.59, F.82, I.83 Ligand excluded by PLIP FMT.14: 6 residues within 4Å: Chain B: V.37, A.38 Chain C: S.105, Y.106, W.108 Ligands: FMT.19 Ligand excluded by PLIP FMT.15: 4 residues within 4Å: Chain B: V.101, N.102, Y.106, K.109 Ligand excluded by PLIP FMT.16: 5 residues within 4Å: Chain C: A.38, W.68, F.70, S.71, S.73 Ligand excluded by PLIP FMT.17: 3 residues within 4Å: Chain C: W.68, T.75, L.97 Ligand excluded by PLIP FMT.18: 4 residues within 4Å: Chain C: H.54, K.55, R.56 Chain D: H.67 Ligand excluded by PLIP FMT.19: 3 residues within 4Å: Chain C: S.105, Y.106 Ligands: FMT.14 Ligand excluded by PLIP FMT.20: 4 residues within 4Å: Chain C: V.101, N.102, Y.106, K.109 Ligand excluded by PLIP FMT.21: 3 residues within 4Å: Chain C: K.88, T.119, R.120 Ligand excluded by PLIP FMT.22: 3 residues within 4Å: Chain C: E.28 Chain D: T.30, L.50 Ligand excluded by PLIP FMT.23: 6 residues within 4Å: Chain D: A.38, A.39, W.68, F.70, S.71, S.73 Ligand excluded by PLIP FMT.24: 4 residues within 4Å: Chain D: W.68, T.75, W.95, L.97 Ligand excluded by PLIP FMT.25: 5 residues within 4Å: Chain C: Q.59, F.82, I.83 Chain D: D.103, I.104 Ligand excluded by PLIP FMT.26: 4 residues within 4Å: Chain C: H.67 Chain D: H.54, K.55, R.56 Ligand excluded by PLIP FMT.27: 6 residues within 4Å: Chain D: G.31, T.32, L.46, S.47, P.48, N.69 Ligand excluded by PLIP FMT.28: 5 residues within 4Å: Chain C: D.103, I.104 Chain D: Q.59, F.82, I.83 Ligand excluded by PLIP FMT.29: 6 residues within 4Å: Chain A: S.105, Y.106, W.108 Chain D: V.37, A.38 Ligands: FMT.4 Ligand excluded by PLIP FMT.30: 4 residues within 4Å: Chain D: V.101, N.102, Y.106, K.109 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hayouka, R. et al., Critical importance of loop conformation to avidin-enhanced hydrolysis of an active biotin ester. Acta Crystallogr.,Sect.D (2008)

Release Date

2007-12-25

Peptides

Avidin-related protein 4/5: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Avidin-related protein 4/5

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