- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 1 x NA: SODIUM ION(Non-functional Binders)
- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 6 residues within 4Å:- Chain A: F.32, L.33, G.212, H.311, L.312, L.335
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:H.311
EDO.5: 5 residues within 4Å:- Chain A: R.171, R.196, R.197, I.198, A.200
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.171, A:R.171
- Water bridges: A:S.203
EDO.6: 5 residues within 4Å:- Chain A: D.47
- Chain B: D.47, I.50, A.51
- Ligands: EDO.7
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:D.47, B:D.47
EDO.7: 4 residues within 4Å:- Chain A: D.47, A.48, A.51
- Ligands: EDO.6
1 PLIP interactions:1 interactions with chain A- Water bridges: A:A.48
EDO.8: 7 residues within 4Å:- Chain A: K.246, Y.247
- Chain B: T.336, H.337, Y.338
- Ligands: CL.2, EDO.16
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:H.337, A:Y.247
EDO.11: 6 residues within 4Å:- Chain B: P.31, F.32, L.33, D.34, D.333
- Ligands: EDO.14
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:F.32, B:L.33, B:L.33, B:D.333
EDO.12: 10 residues within 4Å:- Chain B: L.33, L.35, A.38, P.211, K.213, N.214, G.216, R.269, R.280, P.375
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:G.216, B:R.269, B:R.280
- Water bridges: B:H.376
EDO.13: 6 residues within 4Å:- Chain B: H.133, H.136, T.138, P.141, D.166, A.303
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:T.138, B:L.139
- Water bridges: B:D.166
EDO.14: 6 residues within 4Å:- Chain A: G.57
- Chain B: L.33, D.34, L.35, K.36
- Ligands: EDO.11
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:L.33, B:L.35, B:K.36, A:G.57
EDO.15: 3 residues within 4Å:- Chain B: R.192, R.197, D.274
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.192, B:D.274
- Water bridges: B:R.197
EDO.16: 5 residues within 4Å:- Chain B: Y.113, Q.187, K.213, Y.338
- Ligands: EDO.8
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.187, B:Y.338
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Burgie, E.S. et al., Molecular architecture of DesV from Streptomyces venezuelae: A PLP-dependent transaminase involved in the biosynthesis of the unusual sugar desosamine. Protein Sci. (2007)
- Release Date
- 2007-05-15
- Peptides
- Transaminase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 1 x NA: SODIUM ION(Non-functional Binders)
- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Burgie, E.S. et al., Molecular architecture of DesV from Streptomyces venezuelae: A PLP-dependent transaminase involved in the biosynthesis of the unusual sugar desosamine. Protein Sci. (2007)
- Release Date
- 2007-05-15
- Peptides
- Transaminase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D