SMTL ID : 2ogj.1 (6 other biounits)

Crystal structure of a dihydroorotase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.62 Å

Oligo State

homo-hexamer

Ligands

12 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.77, H.79, K.175, D.291 Ligands: ZN.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.77, A:H.79, A:D.291 ZN.2: 4 residues within 4Å: Chain A: K.175, H.208, H.231 Ligands: ZN.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.208, A:H.231 ZN.3: 5 residues within 4Å: Chain B: H.77, H.79, K.175, D.291 Ligands: ZN.4 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.77, B:H.79, B:D.291 ZN.4: 5 residues within 4Å: Chain B: K.175, H.208, H.231, D.291 Ligands: ZN.3 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.208, B:H.231 ZN.5: 6 residues within 4Å: Chain C: H.77, H.79, K.175, D.291 Ligands: ZN.6, IMD.7 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.77, C:H.79, C:D.291 ZN.6: 6 residues within 4Å: Chain C: H.77, K.175, H.208, H.231 Ligands: ZN.5, IMD.7 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:H.208, C:H.231 ZN.8: 6 residues within 4Å: Chain D: H.77, H.79, K.175, D.291 Ligands: ZN.9, IMD.10 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:H.77, D:H.79, D:D.291 ZN.9: 5 residues within 4Å: Chain D: K.175, H.208, H.231 Ligands: ZN.8, IMD.10 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:H.208, D:H.231 ZN.11: 5 residues within 4Å: Chain E: H.77, H.79, K.175, D.291 Ligands: ZN.12 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:H.77, E:H.79, E:D.291 ZN.12: 5 residues within 4Å: Chain E: H.77, K.175, H.208, H.231 Ligands: ZN.11 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:H.208, E:H.231 ZN.13: 5 residues within 4Å: Chain F: H.77, H.79, K.175, D.291 Ligands: ZN.14 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:H.77, F:H.79, F:D.291 ZN.14: 4 residues within 4Å: Chain F: K.175, H.208, H.231 Ligands: ZN.13 3 PLIP interactions: 2 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:H.208, F:H.231, H2O.4

2 x IMD: IMIDAZOLE(Non-covalent)

IMD.7: 8 residues within 4Å: Chain C: N.144, K.175, R.177, H.208, H.231, D.291 Ligands: ZN.5, ZN.6 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.177 pi-Cation interactions: C:R.177 IMD.10: 6 residues within 4Å: Chain D: N.144, R.177, H.208, H.231 Ligands: ZN.8, ZN.9 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:N.144, D:R.177, D:H.231 pi-Cation interactions: D:R.177

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sugadev, R. et al., Crystal structure of a dihydroorotase. To be Published

Release Date

2007-02-20

Peptides

Dihydroorotase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Dihydroorotase

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