SMTL ID : 2oh4.1

Crystal structure of Vegfr2 with a benzimidazole-urea inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: F.192, G.193, L.194, A.195, R.196 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:L.194, A:A.195, A:R.196 Water bridges: A:R.177, A:D.197 Salt bridges: A:R.177, A:R.196 SO4.2: 4 residues within 4Å: Chain A: L.36, G.37, R.38, R.196 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.38 Salt bridges: A:K.200

1 x GIG: METHYL (5-{4-[({[2-FLUORO-5-(TRIFLUOROMETHYL)PHENYL]AMINO}CARBONYL)AMINO]PHENOXY}-1H-BENZIMIDAZOL-2-YL)CARBAMATE(Non-covalent)

GIG.3: 23 residues within 4Å: Chain A: L.36, V.44, A.62, K.64, E.81, I.84, L.85, I.88, V.94, V.95, V.112, E.113, F.114, C.115, K.116, G.118, L.164, H.171, L.180, I.189, C.190, D.191, F.192 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:V.44, A:A.62, A:K.64, A:I.84, A:I.88, A:V.95, A:V.112, A:L.180, A:D.191, A:F.192, A:F.192 Hydrogen bonds: A:E.81, A:E.81, A:E.81, A:C.115, A:C.115, A:C.115, A:G.118, A:D.191 Water bridges: A:K.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hasegawa, M. et al., Discovery of Novel Benzimidazoles as Potent Inhibitors of TIE-2 and VEGFR-2 Tyrosine Kinase Receptors. J.Med.Chem. (2007)

Release Date

2007-09-18

Peptides

Vascular endothelial growth factor receptor 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vascular endothelial growth factor receptor 2