SMTL ID : 2oi2.1

Streptococcus pneumoniae Mevalonate Kinase in Complex with Diphosphomevalonate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: S.92, D.135 Ligands: DP6.2 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.92, A:D.135, H2O.3 MG.3: 3 residues within 4Å: Chain B: S.92, D.135 Ligands: DP6.4 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:S.92, B:D.135, H2O.5

2 x DP6: (3R)-3-HYDROXY-5-{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}-3-METHYLPENTANOIC ACID(Non-covalent)

DP6.2: 16 residues within 4Å: Chain A: K.13, I.15, E.19, H.20, V.22, V.23, S.91, S.92, M.129, P.131, S.132, D.135, T.175, G.255, G.256 Ligands: MG.1 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:H.20, A:S.92, A:S.132, A:T.175, A:G.256 Water bridges: A:L.134, A:D.135 Salt bridges: A:K.13, A:K.13 DP6.4: 16 residues within 4Å: Chain B: K.13, I.15, E.19, H.20, V.22, V.23, S.91, S.92, M.129, P.131, S.132, D.135, T.175, G.255, G.256 Ligands: MG.3 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:H.20, B:S.92, B:S.132, B:G.256 Water bridges: B:L.134, B:D.135 Salt bridges: B:K.13, B:K.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Andreassi, J.L. et al., Crystal structure of the Streptococcus pneumoniae mevalonate kinase in complex with diphosphomevalonate. Protein Sci. (2007)

Release Date

2007-05-01

Peptides

Mevalonate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Mevalonate kinase