SMTL ID : 2oil.1

Crystal structure of human RAB25 in complex with GDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: T.39 Ligands: GDP.2 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.39, H2O.1, H2O.1, H2O.1, H2O.1

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 19 residues within 4Å: Chain A: E.33, S.34, G.35, V.36, G.37, K.38, T.39, N.40, F.50, S.51, H.52, N.138, K.139, D.141, L.142, S.168, A.169, L.170 Ligands: MG.1 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:G.35, A:V.36, A:G.37, A:K.38, A:T.39, A:T.39, A:N.40, A:N.40, A:S.51, A:N.138, A:K.139, A:K.139, A:A.169, A:L.170 Water bridges: A:K.38, A:K.38 Salt bridges: A:K.38, A:D.141 pi-Stacking: A:F.50

1 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.3: 2 residues within 4Å: Chain A: R.118, W.119 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, H. et al., Crystal structure of human RAB25 in complex with GDP. To be Published

Release Date

2007-01-23

Peptides

Ras-related protein Rab-25: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ras-related protein Rab-25