- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-10-mer
- Ligands
- 40 x MN: MANGANESE (II) ION(Non-covalent)
- 10 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.5: 13 residues within 4Å:- Chain A: E.153, E.155, E.215, E.222, H.272, R.338, E.357, R.359
- Ligands: MN.1, MN.2, MN.3, MN.4, ADP.8
6 PLIP interactions:6 interactions with chain A- Water bridges: A:N.213, A:R.359, A:R.359
- Salt bridges: A:H.272, A:R.338, A:R.359
PO4.14: 13 residues within 4Å:- Chain B: E.153, E.155, E.215, E.222, H.272, R.338, E.357, R.359
- Ligands: MN.10, MN.11, MN.12, MN.13, ADP.16
5 PLIP interactions:5 interactions with chain B- Water bridges: B:N.213, B:R.359
- Salt bridges: B:H.272, B:R.338, B:R.359
PO4.22: 13 residues within 4Å:- Chain C: E.153, E.155, E.215, E.222, H.272, R.338, E.357, R.359
- Ligands: MN.18, MN.19, MN.20, MN.21, ADP.24
6 PLIP interactions:5 interactions with chain C, 1 interactions with chain B- Water bridges: C:R.338, C:R.338, B:D.82
- Salt bridges: C:H.272, C:R.338, C:R.359
PO4.31: 13 residues within 4Å:- Chain D: E.153, E.155, E.215, E.222, H.272, R.338, E.357, R.359
- Ligands: MN.27, MN.28, MN.29, MN.30, ADP.33
10 PLIP interactions:9 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:E.215, D:E.357
- Water bridges: D:E.153, D:E.153, D:N.213, D:R.359, C:D.82
- Salt bridges: D:H.272, D:R.338, D:R.359
PO4.39: 13 residues within 4Å:- Chain E: E.153, E.155, E.215, E.222, H.272, R.338, E.357, R.359
- Ligands: MN.35, MN.36, MN.37, MN.38, ADP.40
6 PLIP interactions:6 interactions with chain E- Water bridges: E:R.338, E:R.338, E:R.359
- Salt bridges: E:H.272, E:R.338, E:R.359
PO4.46: 13 residues within 4Å:- Chain F: E.153, E.155, E.215, E.222, H.272, R.338, E.357, R.359
- Ligands: MN.42, MN.43, MN.44, MN.45, ADP.49
10 PLIP interactions:10 interactions with chain F- Hydrogen bonds: F:E.155, F:E.215
- Water bridges: F:N.213, F:E.222, F:E.222, F:R.359, F:R.359
- Salt bridges: F:H.272, F:R.338, F:R.359
PO4.55: 13 residues within 4Å:- Chain G: E.153, E.155, E.215, E.222, H.272, R.338, E.357, R.359
- Ligands: MN.51, MN.52, MN.53, MN.54, ADP.57
5 PLIP interactions:5 interactions with chain G- Water bridges: G:N.213, G:R.359
- Salt bridges: G:H.272, G:R.338, G:R.359
PO4.63: 13 residues within 4Å:- Chain H: E.153, E.155, E.215, E.222, H.272, R.338, E.357, R.359
- Ligands: MN.59, MN.60, MN.61, MN.62, ADP.65
6 PLIP interactions:6 interactions with chain H- Water bridges: H:R.338, H:R.338, H:R.359
- Salt bridges: H:H.272, H:R.338, H:R.359
PO4.72: 13 residues within 4Å:- Chain I: E.153, E.155, E.215, E.222, H.272, R.338, E.357, R.359
- Ligands: MN.68, MN.69, MN.70, MN.71, ADP.74
4 PLIP interactions:4 interactions with chain I- Water bridges: I:R.359
- Salt bridges: I:H.272, I:R.338, I:R.359
PO4.80: 13 residues within 4Å:- Chain J: E.153, E.155, E.215, E.222, H.272, R.338, E.357, R.359
- Ligands: MN.76, MN.77, MN.78, MN.79, ADP.81
7 PLIP interactions:6 interactions with chain J, 1 interactions with chain I- Water bridges: J:R.338, J:R.338, J:R.359, I:D.82
- Salt bridges: J:H.272, J:R.338, J:R.359
- 10 x CL: CHLORIDE ION(Non-functional Binders)
CL.6: 4 residues within 4Å:- Chain A: T.212
- Chain E: M.48, K.62, T.63
Ligand excluded by PLIPCL.7: 4 residues within 4Å:- Chain A: M.48, K.62, T.63
- Chain B: T.212
Ligand excluded by PLIPCL.15: 4 residues within 4Å:- Chain B: M.48, K.62, T.63
- Chain C: T.212
Ligand excluded by PLIPCL.23: 4 residues within 4Å:- Chain C: M.48, K.62, T.63
- Chain D: T.212
Ligand excluded by PLIPCL.32: 4 residues within 4Å:- Chain D: M.48, K.62, T.63
- Chain E: T.212
Ligand excluded by PLIPCL.47: 4 residues within 4Å:- Chain F: T.212
- Chain J: M.48, K.62, T.63
Ligand excluded by PLIPCL.48: 4 residues within 4Å:- Chain F: M.48, K.62, T.63
- Chain G: T.212
Ligand excluded by PLIPCL.56: 4 residues within 4Å:- Chain G: M.48, K.62, T.63
- Chain H: T.212
Ligand excluded by PLIPCL.64: 4 residues within 4Å:- Chain H: M.48, K.62, T.63
- Chain I: T.212
Ligand excluded by PLIPCL.73: 4 residues within 4Å:- Chain I: M.48, K.62, T.63
- Chain J: T.212
Ligand excluded by PLIP- 10 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.8: 20 residues within 4Å:- Chain A: W.149, F.150, G.151, E.153, A.210, E.222, Q.224, I.225, G.226, P.227, N.274, S.276, R.281, R.338, R.343, Y.355, E.357
- Ligands: MN.2, MN.3, PO4.5
10 PLIP interactions:9 interactions with chain A, 1 interactions with chain E- Hydrogen bonds: A:N.274, A:S.276, A:S.276
- Water bridges: A:N.213, A:R.343, A:R.343, E:N.80
- Salt bridges: A:R.338, A:R.343
- pi-Stacking: A:Y.355
ADP.16: 21 residues within 4Å:- Chain B: W.149, F.150, G.151, E.153, A.210, E.222, Q.224, I.225, G.226, P.227, N.274, F.275, S.276, R.281, R.338, R.343, Y.355, E.357
- Ligands: MN.11, MN.12, PO4.14
13 PLIP interactions:11 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:S.276, B:S.276
- Water bridges: B:E.222, B:E.222, B:G.226, B:N.274, B:N.274, B:R.338, A:K.62, A:N.80
- Salt bridges: B:R.338, B:R.343
- pi-Stacking: B:Y.355
ADP.24: 20 residues within 4Å:- Chain C: W.149, F.150, G.151, E.153, A.210, E.222, Q.224, I.225, G.226, P.227, N.274, F.275, S.276, R.338, R.343, Y.355, E.357
- Ligands: MN.19, MN.20, PO4.22
13 PLIP interactions:12 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:S.276, C:S.276, B:N.80
- Water bridges: C:G.226, C:R.338, C:R.338, C:R.338, C:R.338, C:R.343, C:R.343, C:R.343
- Salt bridges: C:R.338, C:R.343
ADP.33: 21 residues within 4Å:- Chain D: W.149, F.150, G.151, E.153, A.210, E.222, Q.224, I.225, G.226, P.227, N.274, F.275, S.276, R.281, R.338, R.343, Y.355, E.357
- Ligands: MN.28, MN.29, PO4.31
16 PLIP interactions:15 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:N.274, D:S.276, D:S.276, D:E.357, C:N.80
- Water bridges: D:E.222, D:E.222, D:Q.224, D:G.226, D:R.338, D:R.338, D:R.343
- Salt bridges: D:R.338, D:R.343
- pi-Stacking: D:Y.355, D:Y.355
ADP.40: 20 residues within 4Å:- Chain E: W.149, F.150, G.151, E.153, A.210, E.222, Q.224, I.225, G.226, P.227, N.274, S.276, R.281, R.338, R.343, Y.355, E.357
- Ligands: MN.36, MN.37, PO4.39
11 PLIP interactions:11 interactions with chain E- Hydrogen bonds: E:G.226, E:S.276, E:S.276
- Water bridges: E:R.338, E:R.338, E:R.343, E:R.343
- Salt bridges: E:R.338, E:R.343
- pi-Stacking: E:Y.355, E:Y.355
ADP.49: 20 residues within 4Å:- Chain F: W.149, F.150, G.151, E.153, A.210, E.222, Q.224, I.225, G.226, P.227, N.274, S.276, R.281, R.338, R.343, Y.355, E.357
- Ligands: MN.43, MN.44, PO4.46
12 PLIP interactions:11 interactions with chain F, 1 interactions with chain J- Hydrogen bonds: F:N.274, F:S.276, F:S.276
- Water bridges: F:N.213, F:N.213, F:E.222, F:R.343, F:R.343, J:N.80
- Salt bridges: F:R.338, F:R.343
- pi-Stacking: F:Y.355
ADP.57: 21 residues within 4Å:- Chain G: W.149, F.150, G.151, E.153, A.210, E.222, Q.224, I.225, G.226, P.227, N.274, F.275, S.276, R.281, R.338, R.343, Y.355, E.357
- Ligands: MN.52, MN.53, PO4.55
13 PLIP interactions:11 interactions with chain G, 2 interactions with chain F- Hydrogen bonds: G:S.276, G:S.276
- Water bridges: G:Q.224, G:Q.224, G:G.226, G:N.274, G:N.274, G:R.338, F:K.62, F:N.80
- Salt bridges: G:R.338, G:R.343
- pi-Stacking: G:Y.355
ADP.65: 20 residues within 4Å:- Chain H: W.149, F.150, G.151, E.153, A.210, E.222, Q.224, I.225, G.226, P.227, N.274, F.275, S.276, R.338, R.343, Y.355, E.357
- Ligands: MN.60, MN.61, PO4.63
13 PLIP interactions:12 interactions with chain H, 1 interactions with chain G- Hydrogen bonds: H:S.276, H:S.276, G:N.80
- Water bridges: H:G.226, H:R.338, H:R.338, H:R.338, H:R.338, H:R.343, H:R.343, H:Y.355
- Salt bridges: H:R.338, H:R.343
ADP.74: 21 residues within 4Å:- Chain I: W.149, F.150, G.151, E.153, A.210, E.222, Q.224, I.225, G.226, P.227, N.274, F.275, S.276, R.281, R.338, R.343, Y.355, E.357
- Ligands: MN.69, MN.70, PO4.72
12 PLIP interactions:11 interactions with chain I, 1 interactions with chain H- Hydrogen bonds: I:N.274, I:S.276, I:S.276, H:N.80
- Water bridges: I:G.226, I:R.338, I:R.338, I:R.343
- Salt bridges: I:R.338, I:R.343
- pi-Stacking: I:Y.355, I:Y.355
ADP.81: 20 residues within 4Å:- Chain J: W.149, F.150, G.151, E.153, A.210, E.222, Q.224, I.225, G.226, P.227, N.274, S.276, R.281, R.338, R.343, Y.355, E.357
- Ligands: MN.77, MN.78, PO4.80
13 PLIP interactions:13 interactions with chain J- Hydrogen bonds: J:G.226, J:S.276, J:S.276
- Water bridges: J:Q.224, J:Q.224, J:R.338, J:R.338, J:R.343, J:R.343
- Salt bridges: J:R.338, J:R.343
- pi-Stacking: J:Y.355, J:Y.355
- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.9: 6 residues within 4Å:- Chain A: K.33, P.107, F.108, D.250
- Chain E: V.35, Y.36
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.33, A:P.107, A:F.108
- Water bridges: A:R.246
GOL.17: 6 residues within 4Å:- Chain A: V.35, Y.36
- Chain B: K.33, P.107, F.108, D.250
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:K.33, B:P.107, B:F.108, B:D.250
- Water bridges: B:R.246
GOL.25: 6 residues within 4Å:- Chain B: V.35, Y.36
- Chain C: K.33, P.107, F.108, D.250
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:K.33, C:P.107, C:F.108
- Water bridges: C:R.246
GOL.26: 5 residues within 4Å:- Chain C: A.101, A.102, S.232, D.235, H.236
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:R.133, C:D.235, C:H.236
GOL.34: 6 residues within 4Å:- Chain C: V.35, Y.36
- Chain D: K.33, P.107, F.108, D.250
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:K.33, D:P.107, D:F.108
- Water bridges: D:R.246, D:D.250
GOL.41: 6 residues within 4Å:- Chain D: V.35, Y.36
- Chain E: K.33, P.107, F.108, D.250
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:K.33, E:F.108
- Water bridges: E:R.246, E:D.250
GOL.50: 6 residues within 4Å:- Chain F: K.33, P.107, F.108, D.250
- Chain J: V.35, Y.36
4 PLIP interactions:4 interactions with chain F- Hydrogen bonds: F:K.33, F:P.107, F:F.108
- Water bridges: F:R.246
GOL.58: 6 residues within 4Å:- Chain F: V.35, Y.36
- Chain G: K.33, P.107, F.108, D.250
5 PLIP interactions:5 interactions with chain G- Hydrogen bonds: G:K.33, G:P.107, G:F.108, G:D.250
- Water bridges: G:R.246
GOL.66: 6 residues within 4Å:- Chain G: V.35, Y.36
- Chain H: K.33, P.107, F.108, D.250
6 PLIP interactions:4 interactions with chain H, 2 interactions with chain G- Hydrogen bonds: H:K.33, H:P.107, H:F.108
- Water bridges: H:R.246, G:Y.36, G:Y.36
GOL.67: 5 residues within 4Å:- Chain H: A.101, A.102, S.232, D.235, H.236
4 PLIP interactions:4 interactions with chain H- Hydrogen bonds: H:R.133, H:D.235, H:D.235, H:H.236
GOL.75: 6 residues within 4Å:- Chain H: V.35, Y.36
- Chain I: K.33, P.107, F.108, D.250
5 PLIP interactions:5 interactions with chain I- Hydrogen bonds: I:K.33, I:P.107, I:F.108
- Water bridges: I:R.246, I:D.250
GOL.82: 6 residues within 4Å:- Chain I: V.35, Y.36
- Chain J: K.33, P.107, F.108, D.250
4 PLIP interactions:4 interactions with chain J- Hydrogen bonds: J:K.33, J:F.108
- Water bridges: J:R.246, J:D.250
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Krajewski, W.W. et al., Crystal structures of mammalian glutamine synthetases illustrate substrate-induced conformational changes and provide opportunities for drug and herbicide design. J.Mol.Biol. (2008)
- Release Date
- 2007-03-13
- Peptides
- Glutamine synthetase: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
AG
BH
CI
DJ
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-10-mer
- Ligands
- 40 x MN: MANGANESE (II) ION(Non-covalent)
- 10 x PO4: PHOSPHATE ION(Non-functional Binders)
- 10 x CL: CHLORIDE ION(Non-functional Binders)
- 10 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Krajewski, W.W. et al., Crystal structures of mammalian glutamine synthetases illustrate substrate-induced conformational changes and provide opportunities for drug and herbicide design. J.Mol.Biol. (2008)
- Release Date
- 2007-03-13
- Peptides
- Glutamine synthetase: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
AG
BH
CI
DJ
E