SMTL ID : 2okl.1 (1 other biounit)

Crystal structure of Peptide Deformylase 2 with actinonin from Bacillus cereus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: Q.66, C.111, H.154, H.158 Ligands: BB2.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.111, A:H.154, A:H.158

2 x BB2: ACTINONIN(Non-covalent)

BB2.2: 18 residues within 4Å: Chain A: R.57, P.58, G.59, I.60, G.61, Q.66, L.105, G.108, E.109, G.110, C.111, L.112, I.150, V.151, H.154, E.155, H.158 Ligands: ZN.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:E.109, A:I.150, A:V.151, A:H.154 Hydrogen bonds: A:I.60, A:Q.66, A:G.110, A:G.110, A:L.112, A:E.155 Water bridges: A:G.107 BB2.3: 4 residues within 4Å: Chain A: Q.106, G.107, L.183, R.185 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Q.106, A:L.183, A:L.183 Hydrogen bonds: A:R.185, A:R.185 Water bridges: A:Q.106

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.4: 3 residues within 4Å: Chain A: S.97, T.129, R.143 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.129, A:T.129 Water bridges: A:S.97, A:S.97, A:R.127, A:T.129 Salt bridges: A:R.143, A:R.143

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, J.K. et al., Characterization of Peptide Deformylase2 from B. cereus. J.Biochem.Mol.Biol. (2007)

Release Date

2008-01-15

Peptides

Peptide deformylase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptide deformylase 2

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