SMTL ID : 2okn.1

Crystal Strcture of Human Prolidase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

homo-dimer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 7 residues within 4Å: Chain A: D.288, H.371, T.411, E.413, E.453 Ligands: MN.2, PI.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.288, A:H.371, A:E.413, A:E.453 MN.2: 7 residues within 4Å: Chain A: Y.242, D.277, D.288, T.290, E.453 Ligands: MN.1, PI.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.277, A:D.277, A:D.288, A:E.453 MN.4: 7 residues within 4Å: Chain B: D.288, H.371, T.411, E.413, E.453 Ligands: MN.5, PI.6 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.288, B:H.371, B:E.413, B:E.453 MN.5: 7 residues within 4Å: Chain B: Y.242, D.277, D.288, T.290, E.453 Ligands: MN.4, PI.6 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.277, B:D.277, B:D.288, B:E.453, H2O.9

3 x PI: HYDROGENPHOSPHATE ION(Non-covalent)

PI.3: 8 residues within 4Å: Chain A: D.277, D.288, H.371, H.378, E.413, E.453 Ligands: MN.1, MN.2 5 PLIP interactions: 5 interactions with chain A Water bridges: A:H.378, A:R.399 Salt bridges: A:H.371, A:H.378, A:R.451 PI.6: 8 residues within 4Å: Chain B: D.277, D.288, H.371, H.378, E.413, E.453 Ligands: MN.4, MN.5 4 PLIP interactions: 4 interactions with chain B Water bridges: B:H.378 Salt bridges: B:H.371, B:H.378, B:R.451 PI.7: 4 residues within 4Å: Chain B: V.387, R.402, H.403, Q.405 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:H.403, B:Q.405 Water bridges: B:R.402 Salt bridges: B:H.403

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

MUELLER, U. et al., Crystal Structure of Human Prolidase: The Molecular Basis of PD Disease. To be Published

Release Date

2007-02-20

Peptides

Xaa-Pro dipeptidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Xaa-Pro dipeptidase

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