SMTL ID : 2olm.1

ArfGap domain of HIV-1 Rev binding protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.28, C.31, C.48, C.51 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.28, A:C.31, A:C.48, A:C.51 ZN.15: 4 residues within 4Å: Chain B: C.28, C.31, C.48, C.51 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.28, B:C.31, B:C.48, B:C.51

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.63, K.65, T.70 Ligands: UNX.11 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.64 Salt bridges: A:R.63, A:K.65 SO4.3: 3 residues within 4Å: Chain A: P.23, R.26 Chain B: K.7 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Salt bridges: B:K.7, A:R.26 SO4.16: 4 residues within 4Å: Chain B: R.63, K.65, T.70 Ligands: UNX.25 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:V.64 Salt bridges: B:R.63, B:K.65 SO4.17: 3 residues within 4Å: Chain A: K.7 Chain B: P.23, R.26 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Salt bridges: B:R.26, A:K.7

2 x UNL: UNKNOWN LIGAND

UNL.4: 4 residues within 4Å: Chain A: T.42, P.60, P.61, H.62 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.42, A:P.60 UNL.18: 4 residues within 4Å: Chain B: T.42, P.60, P.61, H.62 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:T.42, B:P.60

18 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.5: 1 residues within 4Å: Chain A: R.124 Ligand excluded by PLIP UNX.6: 3 residues within 4Å: Chain A: H.12, T.73, Q.74 Ligand excluded by PLIP UNX.7: 1 residues within 4Å: Chain A: Y.126 Ligand excluded by PLIP UNX.8: 1 residues within 4Å: Chain A: S.100 Ligand excluded by PLIP UNX.9: 4 residues within 4Å: Chain A: V.43, H.83, C.88, W.92 Ligand excluded by PLIP UNX.10: 6 residues within 4Å: Chain A: W.92, K.119, K.123, R.124, W.125, Y.126 Ligand excluded by PLIP UNX.11: 2 residues within 4Å: Chain A: K.65 Ligands: SO4.2 Ligand excluded by PLIP UNX.12: 5 residues within 4Å: Chain A: R.17, D.18, G.21 Chain B: E.10, K.11 Ligand excluded by PLIP UNX.13: 3 residues within 4Å: Chain A: R.17 Chain B: R.17 Ligands: UNX.27 Ligand excluded by PLIP UNX.19: 1 residues within 4Å: Chain B: R.124 Ligand excluded by PLIP UNX.20: 3 residues within 4Å: Chain B: H.12, T.73, Q.74 Ligand excluded by PLIP UNX.21: 1 residues within 4Å: Chain B: Y.126 Ligand excluded by PLIP UNX.22: 1 residues within 4Å: Chain B: S.100 Ligand excluded by PLIP UNX.23: 4 residues within 4Å: Chain B: V.43, H.83, C.88, W.92 Ligand excluded by PLIP UNX.24: 6 residues within 4Å: Chain B: W.92, K.119, K.123, R.124, W.125, Y.126 Ligand excluded by PLIP UNX.25: 2 residues within 4Å: Chain B: K.65 Ligands: SO4.16 Ligand excluded by PLIP UNX.26: 5 residues within 4Å: Chain A: E.10, K.11 Chain B: R.17, D.18, G.21 Ligand excluded by PLIP UNX.27: 3 residues within 4Å: Chain A: R.17 Chain B: R.17 Ligands: UNX.13 Ligand excluded by PLIP

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.14: 4 residues within 4Å: Chain A: F.96, D.97, D.98, R.99 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.98, A:D.98 Water bridges: A:F.96 GOL.28: 4 residues within 4Å: Chain B: F.96, D.97, D.98, R.99 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.98, B:D.98 Water bridges: B:F.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tong, Y. et al., ArfGap domain of HIV-1 Rev binding protein. To be Published

Release Date

2007-01-30

Peptides

Nucleoporin-like protein RIP: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Nucleoporin-like protein RIP