SMTL ID : 2omd.1

Crystal structure of molybdopterin converting factor subunit 2 (aq_2181) from aquifex aeolicus VF5

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain A: W.15, G.17, A.18, P.97 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.15, A:A.18 NA.5: 5 residues within 4Å: Chain B: W.15, G.17, A.18, E.19, P.97 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:W.15, B:A.18

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: Y.59, P.60, E.61, M.62 Ligand excluded by PLIP

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.3: 4 residues within 4Å: Chain A: I.40, Y.56, K.123, K.130 8 PLIP interactions: 6 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Y.56, A:Y.56, A:K.130 Water bridges: A:R.42, A:R.42, A:K.123, B:G.32, B:G.32

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.4: 2 residues within 4Å: Chain A: H.107, R.108 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.108, A:R.108 FMT.8: 2 residues within 4Å: Chain B: H.107, R.108 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.108 Water bridges: B:R.108, B:R.108

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 6 residues within 4Å: Chain B: E.2, P.7, V.9, Y.10, L.11, I.64 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.2, B:L.11, B:L.11 GOL.7: 5 residues within 4Å: Chain B: Y.56, H.87, K.123, I.128, K.130 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:K.123, B:I.128, B:K.130 Water bridges: B:Y.56, B:S.98, B:K.123, B:K.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jeyakanthan, J. et al., Crystal structure of molybdopterin converting factor subunit 2 (aq_2181) from aquifex aeolicus VF5. To be Published

Release Date

2008-01-29

Peptides

Molybdopterin-converting factor subunit 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Molybdopterin-converting factor subunit 2