SMTL ID : 2onh.1

Crystal Structure of of limonene synthase with 2-fluorolinalyl diphosphate(FLPP)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

6 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: D.296, D.300, Y.371, E.374 Ligands: MN.2, F3P.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.296, A:D.300 MN.2: 4 residues within 4Å: Chain A: D.296, D.300 Ligands: MN.1, F3P.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.296, A:D.300 MN.3: 4 residues within 4Å: Chain A: R.437, D.440, T.444 Ligands: F3P.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.440, A:D.440 MN.6: 6 residues within 4Å: Chain B: D.296, D.300, Y.371, E.374 Ligands: MN.7, F3P.9 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.296, B:D.300 MN.7: 5 residues within 4Å: Chain B: D.296, D.300, D.453 Ligands: MN.6, F3P.9 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.296, B:D.300 MN.8: 4 residues within 4Å: Chain B: D.440, T.444, K.456 Ligands: F3P.9 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.440

2 x F3P: (1S)-1-[(1S)-1-FLUOROETHYL]-1,5-DIMETHYLHEXYL TRIHYDROGEN DIPHOSPHATE(Non-covalent)

F3P.4: 16 residues within 4Å: Chain A: R.259, W.268, N.289, T.293, D.296, D.300, S.396, I.397, R.437, D.440, Y.517, D.521, H.523 Ligands: MN.1, MN.2, MN.3 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.268, A:N.289 Salt bridges: A:R.259, A:R.437, A:K.456 F3P.9: 19 residues within 4Å: Chain B: R.259, W.268, N.289, I.292, T.293, D.296, D.300, S.396, I.397, S.398, M.402, R.437, D.440, D.453, Y.517, H.523 Ligands: MN.6, MN.7, MN.8 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:W.268, B:N.289, B:I.292, B:H.523 Hydrogen bonds: B:Y.517 Salt bridges: B:R.259, B:R.437, B:K.456

1 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

BTB.5: 9 residues within 4Å: Chain A: E.387, L.390, E.391, R.430, F.434, L.479, E.482, V.483, K.486 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.430, A:K.486 Salt bridges: A:E.387 pi-Cation interactions: A:F.434

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hyatt, D.C. et al., Structure of limonene synthase, a simple model for terpenoid cyclase catalysis. Proc.Natl.Acad.Sci.Usa (2007)

Release Date

2007-03-06

Peptides

4S-limonene synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

4S-limonene synthase

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