SMTL ID : 2oo4.1 (1 other biounit)

Structure of LNR-HD (Negative Regulatory Region) from human Notch 2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: K.12, D.15, V.17, D.19, D.30, D.33 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:K.12, A:V.17, A:D.19, A:D.30, A:D.33 CA.2: 6 residues within 4Å: Chain A: Y.54, N.56, Q.58, D.60, D.71, E.74 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:Y.54, A:Q.58, A:D.60, A:D.71, A:E.74 CA.3: 6 residues within 4Å: Chain A: H.91, D.94, H.96, N.98, D.109, D.112 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.91, A:D.94, A:H.96, A:D.109, A:D.112

1 x ZN: ZINC ION(Non-covalent)

ZN.4: 3 residues within 4Å: Chain A: E.104, H.153, H.195 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.104, A:H.153, A:H.195, H2O.2

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 4 residues within 4Å: Chain A: E.165, L.166, V.168, Y.169 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.165, A:E.165 Water bridges: A:E.165, A:L.166 GOL.6: 3 residues within 4Å: Chain A: S.47, P.48, W.52 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.48 GOL.7: 3 residues within 4Å: Chain A: N.102, Q.188, D.192 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.102, A:Q.188 Water bridges: A:N.102 GOL.8: 1 residues within 4Å: Chain A: R.160 No protein-ligand interaction detected (PLIP) GOL.9: 10 residues within 4Å: Chain A: F.92, G.107, G.110, L.145, R.146, G.149, T.150, T.154, N.155, L.156 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.110, A:L.156, A:L.156 Water bridges: A:G.107, A:G.149, A:T.154, A:N.155 GOL.10: 6 residues within 4Å: Chain A: K.93, A.141, R.142, L.145, I.158, R.160 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.160 Water bridges: A:A.141 GOL.11: 1 residues within 4Å: Chain A: D.194 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.194 GOL.12: 3 residues within 4Å: Chain A: A.10, D.11, A.13 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gordon, W.R. et al., Structural basis for autoinhibition of Notch. Nat.Struct.Mol.Biol. (2007)

Release Date

2007-04-03

Peptides

Neurogenic locus notch homolog protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Neurogenic locus notch homolog protein 2

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