SMTL ID : 2oor.1

Structure of transhydrogenase (dI.NAD+)2(dIII.H2NADPH)1 asymmetric complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.32 Å

Oligo State

hetero-2-1-mer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 21 residues within 4Å: Chain A: R.127, I.128, S.129, Q.132, D.135, S.138, G.179, V.180, G.181, V.182, D.202, V.203, R.204, G.234, A.236, Q.247, T.264, A.265, L.266, P.273, L.275 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:R.127 Hydrogen bonds: A:R.127, A:I.128, A:V.180, A:V.180, A:V.182, A:V.203, A:R.204, A:R.204, A:Q.247, A:L.266, A:L.266 Water bridges: A:S.141, A:M.239 NAD.2: 14 residues within 4Å: Chain B: R.127, G.179, V.180, G.181, V.182, D.202, V.203, R.204, Q.247, T.264, A.265, L.266, P.273, L.275 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:V.180, B:V.182, B:V.203, B:R.204, B:R.204, B:L.266, B:L.266 Water bridges: B:G.181, B:A.183

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain B: R.15, Q.75, H.99, E.296, N.322 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.15, B:N.322 Water bridges: B:Q.75, B:H.99

1 x TXP: 1,4,5,6-TETRAHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE(Non-covalent)

TXP.4: 27 residues within 4Å: Chain B: Q.132 Chain C: G.25, Y.26, G.27, V.30, A.31, V.58, A.59, G.60, R.61, M.62, P.63, G.100, A.101, N.102, D.103, V.104, K.135, R.136, S.137, A.139, S.140, G.141, Y.142, G.160, D.161, A.162 21 PLIP interactions: 20 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:Y.26, C:G.27, C:G.60, C:G.60, C:N.102, C:N.102, C:D.103, C:D.103, C:D.103, C:D.103, C:V.104, C:R.136, C:S.137, C:A.139, C:Y.142, C:D.161, C:A.162, B:Q.132 Salt bridges: C:R.61, C:K.135, C:R.136

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bhakta, T. et al., Structures of the dI(2)dIII(1) Complex of Proton-Translocating Transhydrogenase with Bound, Inactive Analogues of NADH and NADPH Reveal Active Site Geometries. Biochemistry (2007)

Release Date

2007-03-13

Peptides

NAD(P) transhydrogenase subunit alpha part 1: AB
NAD(P) transhydrogenase subunit beta: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

NAD(P) transhydrogenase subunit alpha part 1

NAD(P) transhydrogenase subunit beta

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