SMTL ID : 2op9.1

Substrate Specificity Profiling and Identification of a New Class of Inhibitor for the Major Protease of the SARS Coronavirus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x WR1: NALPHA-[(BENZYLOXY)CARBONYL]-N-[(1R)-4-HYDROXY-1-METHYL-2-OXOBUTYL]-L-PHENYLALANINAMIDE(Non-covalent)(Covalent)

WR1.1: 13 residues within 4Å: Chain A: H.42, M.50, L.142, N.143, G.144, S.145, C.146, H.165, M.166, E.167, D.188, R.189, Q.190 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:M.166, A:E.167 Hydrogen bonds: A:H.42, A:L.142, A:G.144, A:C.146, A:E.167 Water bridges: A:Q.190 pi-Stacking: A:H.42 WR1.2: 14 residues within 4Å: Chain A: A.1 Chain B: H.42, M.50, L.142, G.144, S.145, C.146, H.165, M.166, E.167, V.187, D.188, R.189, Q.190 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:M.166, B:D.188 Hydrogen bonds: B:H.42, B:L.142, B:G.144, B:C.146, B:E.167 Water bridges: B:S.145 pi-Stacking: B:H.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goetz, D.H. et al., Substrate Specificity Profiling and Identification of a New Class of Inhibitor for the Major Protease of the SARS Coronavirus. Biochemistry (2007)

Release Date

2007-07-17

Peptides

Replicase polyprotein 1ab (pp1ab, ORF1AB) 3C-like proteinase (3CL-PRO, 3CLp): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Replicase polyprotein 1ab (pp1ab, ORF1AB) 3C-like proteinase (3CL-PRO, 3CLp)