SMTL ID : 2opx.1

Crystal Structure of Lactaldehyde Dehydrogenase from Escherichia coli

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.53 Å

Oligo State

homo-tetramer

Ligands

12 x DXC: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID(Non-covalent)

DXC.1: 10 residues within 4Å: Chain A: L.100, F.107, F.154, F.157, I.279, N.286, F.442, E.443 Chain C: R.131 Ligands: DXC.3 13 PLIP interactions: 11 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: A:L.100, A:F.107, A:F.107, A:F.154, A:F.154, A:F.157, A:I.279, A:F.442 Hydrogen bonds: A:N.286, A:N.286 Water bridges: A:F.442, C:R.131 Salt bridges: C:R.131 DXC.2: 6 residues within 4Å: Chain A: F.314, G.315, N.316, R.320, K.361, Y.364 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.314, A:Y.364, A:Y.364 Hydrogen bonds: A:R.320, A:R.320 Water bridges: A:N.316 DXC.3: 9 residues within 4Å: Chain A: I.97, L.100, D.275, N.321, D.322, I.323, A.324, F.442 Ligands: DXC.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.97, A:L.100, A:F.442 Hydrogen bonds: A:D.322 DXC.4: 10 residues within 4Å: Chain B: L.100, F.107, F.154, F.157, I.279, N.286, F.442, E.443 Chain D: R.131 Ligands: DXC.6 13 PLIP interactions: 11 interactions with chain B, 2 interactions with chain D Hydrophobic interactions: B:L.100, B:F.107, B:F.107, B:F.154, B:F.154, B:F.157, B:I.279, B:F.442 Hydrogen bonds: B:N.286, B:N.286 Water bridges: B:F.442, D:R.131 Salt bridges: D:R.131 DXC.5: 6 residues within 4Å: Chain B: F.314, G.315, N.316, R.320, K.361, Y.364 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:F.314, B:Y.364, B:Y.364 Hydrogen bonds: B:R.320, B:R.320 Water bridges: B:N.316 DXC.6: 9 residues within 4Å: Chain B: I.97, L.100, D.275, N.321, D.322, I.323, A.324, F.442 Ligands: DXC.4 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:I.97, B:L.100, B:F.442 Hydrogen bonds: B:D.322 DXC.7: 10 residues within 4Å: Chain A: R.131 Chain C: L.100, F.107, F.154, F.157, I.279, N.286, F.442, E.443 Ligands: DXC.9 13 PLIP interactions: 11 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: C:L.100, C:F.107, C:F.107, C:F.154, C:F.154, C:F.157, C:I.279, C:F.442 Hydrogen bonds: C:N.286, C:N.286 Water bridges: C:R.439, A:R.131 Salt bridges: A:R.131 DXC.8: 6 residues within 4Å: Chain C: F.314, G.315, N.316, R.320, K.361, Y.364 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:F.314, C:Y.364, C:Y.364 Hydrogen bonds: C:R.320, C:R.320 Water bridges: C:N.316 DXC.9: 9 residues within 4Å: Chain C: I.97, L.100, D.275, N.321, D.322, I.323, A.324, F.442 Ligands: DXC.7 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:I.97, C:L.100, C:F.442 Hydrogen bonds: C:D.322 DXC.10: 10 residues within 4Å: Chain B: R.131 Chain D: L.100, F.107, F.154, F.157, I.279, N.286, F.442, E.443 Ligands: DXC.12 13 PLIP interactions: 11 interactions with chain D, 2 interactions with chain B Hydrophobic interactions: D:L.100, D:F.107, D:F.107, D:F.154, D:F.154, D:F.157, D:I.279, D:F.442 Hydrogen bonds: D:N.286, D:N.286 Water bridges: D:R.439, B:R.131 Salt bridges: B:R.131 DXC.11: 6 residues within 4Å: Chain D: F.314, G.315, N.316, R.320, K.361, Y.364 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:F.314, D:Y.364, D:Y.364 Hydrogen bonds: D:R.320, D:R.320 Water bridges: D:N.316 DXC.12: 9 residues within 4Å: Chain D: I.97, L.100, D.275, N.321, D.322, I.323, A.324, F.442 Ligands: DXC.10 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:I.97, D:L.100, D:F.442 Hydrogen bonds: D:D.322

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Francuski, D. et al., Crystal Structure of Lactaldehyde Dehydrogenase from Escherichia coli. To be Published

Release Date

2007-02-20

Peptides

Aldehyde dehydrogenase A: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Aldehyde dehydrogenase A