SMTL ID : 2ori.1

Crystal structure of a thermostable mutant of Bacillus subtilis Adenylate Kinase (A193V/Q199R/)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.130, C.133, C.150, D.153 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:C.130, A:C.133, A:C.150, A:D.153, A:D.153 ZN.4: 5 residues within 4Å: Chain B: C.130, C.133, T.135, C.150, D.153 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:C.130, B:C.133, B:C.150, B:D.153, B:D.153

2 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.2: 2 residues within 4Å: Chain A: G.14 Ligands: AP5.3 No protein-ligand interaction detected (PLIP) MG.5: 1 residues within 4Å: Ligands: AP5.6 No protein-ligand interaction detected (PLIP)

2 x AP5: BIS(ADENOSINE)-5'-PENTAPHOSPHATE(Non-covalent)

AP5.3: 33 residues within 4Å: Chain A: P.9, G.10, A.11, G.12, K.13, G.14, T.15, T.31, G.32, F.35, R.36, I.53, E.57, L.58, V.59, T.64, G.85, F.86, R.88, Q.92, R.123, L.124, R.127, T.136, Y.137, H.138, F.141, R.160, R.171, G.197, R.199, I.201 Ligands: MG.2 44 PLIP interactions: 44 interactions with chain A Hydrogen bonds: A:G.10, A:G.12, A:K.13, A:G.14, A:T.15, A:T.15, A:T.31, A:T.31, A:E.57, A:V.59, A:R.88, A:Q.92, A:R.123, A:R.123, A:T.136, A:T.136, A:N.142, A:R.199 Water bridges: A:A.11, A:G.32, A:G.32, A:R.36, A:R.123, A:R.160, A:R.171, A:R.171 Salt bridges: A:K.13, A:K.13, A:K.13, A:R.36, A:R.88, A:R.88, A:R.127, A:R.127, A:R.127, A:R.160, A:R.160, A:R.160, A:R.171, A:R.171 pi-Stacking: A:F.35 pi-Cation interactions: A:R.88, A:R.123, A:R.123 AP5.6: 34 residues within 4Å: Chain B: P.9, G.10, A.11, G.12, K.13, G.14, T.15, T.31, G.32, F.35, R.36, I.53, E.57, L.58, V.59, T.64, G.85, F.86, R.88, Q.92, R.123, L.124, R.127, T.136, Y.137, H.138, F.141, R.160, D.162, R.171, G.197, R.199, I.201 Ligands: MG.5 46 PLIP interactions: 46 interactions with chain B Hydrogen bonds: B:G.10, B:G.12, B:K.13, B:G.14, B:T.15, B:T.15, B:T.31, B:I.53, B:E.57, B:V.59, B:G.85, B:R.88, B:Q.92, B:R.123, B:R.123, B:T.136, B:T.136, B:N.142, B:R.199 Water bridges: B:A.11, B:K.13, B:S.30, B:G.32, B:R.36, B:R.123, B:R.123, B:R.127, B:R.127, B:R.171, B:R.171 Salt bridges: B:K.13, B:K.13, B:K.13, B:R.36, B:R.88, B:R.88, B:R.127, B:R.127, B:R.160, B:R.160, B:R.160, B:R.171, B:R.171 pi-Stacking: B:F.35 pi-Cation interactions: B:R.88, B:R.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Counago, R. et al., Crystal structure of a thermostable mutant of Bacillus subtilis Adenylate Kinase (A193V/Q199R/). To be Published

Release Date

2008-01-15

Peptides

Adenylate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Adenylate kinase