SMTL ID : 2orz.1

Structural Basis for Ligand Binding and Heparin Mediated Activation of Neuropilin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x LYS- PRO- ARG: Tuftsin(Non-covalent)

LYS-PRO-ARG.1: 10 residues within 4Å: Chain A: Y.25, W.29, T.44, D.48, S.74, E.76, T.77, Y.81, G.142, I.143 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.25, A:W.29 Hydrogen bonds: A:Y.25, A:S.74, A:E.76, A:Y.81, A:I.143, A:I.143 Water bridges: A:W.29, A:T.44, A:T.44, A:E.76 Salt bridges: A:D.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vander Kooi, C.W. et al., Structural basis for ligand and heparin binding to neuropilin B domains. Proc.Natl.Acad.Sci.Usa (2007)

Release Date

2007-04-03

Peptides

Neuropilin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Neuropilin-1

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