SMTL ID : 2osy.1 (1 other biounit)

Endo-glycoceramidase II from Rhodococcus sp.: Lactosyl-Enzyme Intermediate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x GLC- GAL: beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose(Post Translational Modification)

GLC-GAL.1: 12 residues within 4Å: Chain A: S.54, K.57, H.126, D.128, A.146, I.147, N.149, W.169, N.223, Y.297, E.342, W.373 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.54, A:K.57, A:I.147, A:N.149, A:W.373, A:K.57, A:H.126, A:N.223 Water bridges: A:S.54, A:S.54, A:S.54, A:S.374

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 2 residues within 4Å: Chain A: N.213, V.216 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.213, A:V.216

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Caines, M.E. et al., Structural and Mechanistic Analyses of endo-Glycoceramidase II, a Membrane-associated Family 5 Glycosidase in the Apo and GM3 Ganglioside-bound Forms. J.Biol.Chem. (2007)

Release Date

2007-02-27

Peptides

Endoglycoceramidase II: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endoglycoceramidase II

Related Entries With Identical Sequence