SMTL ID : 2oty.1

1,2-dichlorobenzene in complex with T4 Lysozyme L99A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

monomer

Ligands

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: R.14, Y.18, K.19 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.19, A:K.19 Water bridges: A:R.14, A:R.14, A:K.19, A:D.20 Salt bridges: A:R.14 PO4.2: 2 residues within 4Å: Chain A: N.144, R.148 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.144 Water bridges: A:R.148, A:R.148, A:R.148 Salt bridges: A:R.148 PO4.3: 2 residues within 4Å: Chain A: R.76, R.80 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.76, A:R.76 Salt bridges: A:R.76, A:R.80

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.4: 3 residues within 4Å: Chain A: D.72, V.75, L.79 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.76

1 x YAN: 1,2-DICHLOROBENZENE(Non-covalent)

YAN.5: 11 residues within 4Å: Chain A: I.78, L.84, V.87, Y.88, A.99, M.102, V.103, V.111, L.118, L.121, F.153 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.111, A:L.118, A:L.121, A:F.153 Halogen bonds: A:L.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mobley, D.L. et al., Predicting absolute ligand binding free energies to a simple model site. J.Mol.Biol. (2007)

Release Date

2007-08-07

Peptides

Lysozyme: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

Lysozyme

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