SMTL ID : 2ou5.1

Crystal structure of a pyridoxamine 5'-phosphate oxidase-related fmn-binding protein (jann_0254) from jannaschia sp. ccs1 at 1.60 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: G.1, M.2, S.3, V.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.3, A:S.3

2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.2: 16 residues within 4Å: Chain A: H.31, R.45, T.46, L.47, V.48, H.62, T.63, S.67, P.68, K.69 Chain B: W.84, Q.91, R.93, L.152, L.154, R.160 25 PLIP interactions: 15 interactions with chain A, 10 interactions with chain B Hydrophobic interactions: A:T.46, A:V.48, B:W.84, B:W.84, B:Q.91, B:L.152, B:L.154 Hydrogen bonds: A:T.46, A:T.46, A:V.48, A:R.50, A:H.62, A:K.69, A:K.69, B:Q.91, B:R.93, B:R.160 Water bridges: A:D.64, A:D.64, A:S.67, A:S.67, B:R.93 Salt bridges: A:R.45, A:K.69, B:R.93 FMN.4: 16 residues within 4Å: Chain A: W.84, Q.91, R.93, L.152, L.154, R.160 Chain B: H.31, R.45, T.46, L.47, V.48, H.62, T.63, S.67, P.68, K.69 24 PLIP interactions: 13 interactions with chain B, 11 interactions with chain A Hydrophobic interactions: B:T.46, A:W.84, A:W.84, A:Q.91, A:L.152, A:L.154 Hydrogen bonds: B:T.46, B:T.46, B:V.48, B:R.50, B:H.62, B:T.63, B:K.69, B:K.69, A:Q.91, A:R.93, A:R.160 Water bridges: B:S.67, B:S.67, A:R.93, A:R.160 Salt bridges: B:R.45, B:K.69, A:R.93

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: R.50, A.115, N.118 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.50, A:R.50, A:N.118 Water bridges: A:R.30 GOL.5: 3 residues within 4Å: Chain B: R.25, R.30, R.50 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:R.25, B:R.25, B:R.30, B:R.50 Water bridges: B:T.22, B:R.30, B:R.30 GOL.6: 7 residues within 4Å: Chain A: W.84, P.86 Chain B: H.26, H.27, P.28, R.30, H.31 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:W.84, B:H.31 GOL.7: 2 residues within 4Å: Chain B: R.20, K.23 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of pyridoxamine 5'-phosphate oxidase-related FMN-binding (YP_508196.1) from Jannaschia sp. CCS1 at 1.60 A resolution. To be published

Release Date

2007-03-06

Peptides

Pyridoxamine 5'-phosphate oxidase-related, FMN-binding: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Pyridoxamine 5'-phosphate oxidase-related, FMN-binding