SMTL ID : 2ou6.1

Crystal structure of a putative metalloenzyme of the duf664 family (dr_1065) from deinococcus radiodurans at 1.80 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 3 residues within 4Å: Chain A: H.77, D.169, H.173 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.77, A:D.169, A:H.173, H2O.4, H2O.6, H2O.6 NI.6: 3 residues within 4Å: Chain B: H.77, D.169, H.173 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.77, B:D.169, B:H.173, H2O.15, H2O.16, H2O.16

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: P.116, A.117 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.117 Water bridges: A:R.118 SO4.3: 4 residues within 4Å: Chain A: N.172, H.173, Q.176 Chain B: R.178 9 PLIP interactions: 6 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:N.172, A:Q.176 Water bridges: A:N.69, A:N.69, A:N.172, B:R.178, B:R.178 Salt bridges: A:H.173, B:R.178 SO4.7: 2 residues within 4Å: Chain B: P.116, A.117 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.117 Water bridges: B:R.118 SO4.8: 4 residues within 4Å: Chain A: R.178 Chain B: N.172, H.173, Q.176 9 PLIP interactions: 6 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:N.172, B:Q.176 Water bridges: B:N.69, B:N.69, B:N.172, A:R.178, A:R.178 Salt bridges: B:H.173, A:R.178

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 4 residues within 4Å: Chain A: W.61, T.73, W.105, L.119 3 PLIP interactions: 3 interactions with chain A Water bridges: A:T.73, A:T.73, A:T.73 GOL.5: 5 residues within 4Å: Chain A: V.84, Y.85, L.88, L.107, H.165 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.85, A:H.165 GOL.9: 4 residues within 4Å: Chain B: W.61, T.73, W.105, L.119 2 PLIP interactions: 2 interactions with chain B Water bridges: B:T.73, B:T.73 GOL.10: 5 residues within 4Å: Chain B: V.84, Y.85, L.88, L.107, H.165 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.85, B:Y.85, B:H.165

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of hypothetical protein (NP_294789.1) from Deinococcus radiodurans at 1.80 A resolution. To be published

Release Date

2007-02-20

Peptides

Hypothetical protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Hypothetical protein