SMTL ID : 2ovr.1

Structure of the Skp1-Fbw7-CyclinEdegN complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SER- LEU- ILE- PRO- TPO- PRO- ASP- LYS: cyclinE N-terminal degron(Non-covalent)

SER-LEU-ILE-PRO-TPO-PRO-ASP-LYS.1: 10 residues within 4Å: Chain B: W.163, T.177, R.203, R.217, R.243, Y.257, Y.283, S.323 Ligands: SO4.12, SO4.13 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:W.163, B:W.163, B:W.163, B:T.177 Hydrogen bonds: B:R.203, B:R.217, B:R.217, B:R.243 Water bridges: B:R.281 Salt bridges: B:R.203, B:R.243

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain B: R.203, R.243, R.412 8 PLIP interactions: 8 interactions with chain B Water bridges: B:R.203, B:R.203, B:R.243, B:R.243, B:R.412 Salt bridges: B:R.203, B:R.243, B:R.412 SO4.3: 4 residues within 4Å: Chain B: Q.126, Q.166, H.206, R.414 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.126, B:Q.166 Water bridges: B:Q.286 Salt bridges: B:H.206, B:R.414 SO4.4: 2 residues within 4Å: Chain B: R.153, T.154 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.154 Salt bridges: B:R.153 SO4.5: 5 residues within 4Å: Chain B: Q.356, P.358, G.392, E.393, F.394 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:F.394 Water bridges: B:F.394 SO4.6: 5 residues within 4Å: Chain B: G.116, H.117, D.118, D.138, K.142 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:H.117, B:D.118, B:D.118 Water bridges: B:K.142, B:K.142 Salt bridges: B:K.142 SO4.7: 3 residues within 4Å: Chain B: R.95, N.417, T.418 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.417, B:T.418 Salt bridges: B:R.95 SO4.8: 5 residues within 4Å: Chain B: N.130, R.131, S.145, V.147, T.148 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.130, B:S.145 Salt bridges: B:R.131 SO4.9: 3 residues within 4Å: Chain B: K.4, P.23, K.24 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.24 Salt bridges: B:K.4, B:K.24 SO4.10: 4 residues within 4Å: Chain B: D.288, L.327, K.328, D.329 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.327, B:D.329 SO4.11: 1 residues within 4Å: Chain B: R.179 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.179 SO4.12: 6 residues within 4Å: Chain B: D.137, G.160, G.161, W.163, T.177 Ligands: SER-LEU-ILE-PRO-TPO-PRO-ASP-LYS.1 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.161, B:W.163, B:T.177 Water bridges: B:D.137 SO4.13: 5 residues within 4Å: Chain B: S.200, T.201, R.217 Ligands: SER-LEU-ILE-PRO-TPO-PRO-ASP-LYS.1, SER-LEU-ILE-PRO-TPO-PRO-ASP-LYS.1 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.200, B:T.201 Salt bridges: B:R.217

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hao, B. et al., Structure of a Fbw7-Skp1-Cyclin E Complex: Multisite-Phosphorylated Substrate Recognition by SCF Ubiquitin Ligases. Mol.Cell (2007)

Release Date

2007-04-24

Peptides

S-phase kinase-associated protein 1A: A
F-box/WD repeat protein 7: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

S-phase kinase-associated protein 1A

F-box/WD repeat protein 7

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