SMTL ID : 2owp.1

Crystal structure of a cystatin-like fold protein (bxe_b1374) from burkholderia xenovorans lb400 at 2.00 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: H.74, R.75 Ligands: SO4.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.75 Salt bridges: A:H.74 SO4.2: 3 residues within 4Å: Chain A: H.74, R.75 Ligands: SO4.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.75 Water bridges: A:R.75, A:T.76, A:T.76, A:T.76

14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: S.94, D.95, A.96, T.97, P.98 No protein-ligand interaction detected (PLIP) EDO.4: 4 residues within 4Å: Chain A: W.37, T.39, E.41 Chain B: V.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.41 EDO.5: 5 residues within 4Å: Chain A: H.38, T.39, P.40, G.54, E.55 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.38, A:E.55 Water bridges: A:G.53, A:A.56 EDO.6: 4 residues within 4Å: Chain A: E.65, P.66, V.67, P.68 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.65, A:E.65 EDO.7: 2 residues within 4Å: Chain A: I.29, E.62 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.62 EDO.8: 4 residues within 4Å: Chain A: E.21, R.71, K.72, L.73 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.21, A:E.21, A:L.73 EDO.9: 7 residues within 4Å: Chain A: N.33, F.36, W.37, H.38, I.57, R.58, R.61 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.38, A:R.58, A:R.61, A:R.61 EDO.10: 4 residues within 4Å: Chain A: V.50, H.52 Chain B: R.75, E.91 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:R.75, A:H.52 Water bridges: A:V.50, A:H.52 EDO.11: 4 residues within 4Å: Chain B: E.21, R.71, K.72, L.73 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.21, B:L.73 EDO.12: 5 residues within 4Å: Chain B: S.70, K.72, T.93, S.94, D.95 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.93, B:T.93, B:D.95 EDO.13: 4 residues within 4Å: Chain B: T.97, P.98, L.99, L.125 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.97 EDO.14: 6 residues within 4Å: Chain B: H.38, T.39, P.40, G.53, G.54, E.55 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.39, B:E.55 EDO.15: 3 residues within 4Å: Chain A: R.75 Chain B: V.50, H.52 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:H.52, B:H.52, A:R.75 Water bridges: B:H.52, A:R.75 EDO.16: 6 residues within 4Å: Chain B: L.24, R.44, V.67, R.71, Q.103, V.123 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.44, B:R.71, B:R.71 Water bridges: B:R.44, B:R.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of hypothetical protein Bxe_B1374 (YP_553940.1) from Burkholderia xenovorans LB400 at 2.00 A resolution. To be published

Release Date

2007-02-27

Peptides

Hypothetical protein Bxe_B1374: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Hypothetical protein Bxe_B1374