SMTL ID : 2ox3.1

R-state, PEP and Fru-6-P-bound, Escherichia coli fructose-1,6-bisphosphatase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.18 Å

Oligo State

homo-tetramer

Ligands

4 x F6P: 6-O-phosphono-beta-D-fructofuranose(Non-covalent)

F6P.1: 13 residues within 4Å: Chain A: D.113, G.114, N.206, Y.239, G.241, S.242, L.243, Y.257, Y.259, K.269, L.270, E.275 Chain B: R.238 16 PLIP interactions: 15 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:D.113, A:D.113, A:G.114, A:N.206, A:L.243, A:Y.257, A:Y.259, A:K.269, A:E.275 Water bridges: A:S.115, A:S.115, A:Y.259, A:K.269, A:R.271 Salt bridges: A:K.269, B:R.238 F6P.3: 13 residues within 4Å: Chain A: R.238 Chain B: D.113, G.114, N.206, Y.239, G.241, S.242, L.243, Y.257, Y.259, K.269, L.270, E.275 16 PLIP interactions: 15 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.113, B:D.113, B:G.114, B:N.206, B:L.243, B:Y.257, B:Y.259, B:K.269, B:E.275 Water bridges: B:S.115, B:S.115, B:Y.259, B:K.269, B:R.271 Salt bridges: B:K.269, A:R.238 F6P.5: 13 residues within 4Å: Chain C: D.113, G.114, N.206, Y.239, G.241, S.242, L.243, Y.257, Y.259, K.269, L.270, E.275 Chain D: R.238 14 PLIP interactions: 13 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:D.113, C:G.114, C:N.206, C:Y.239, C:L.243, C:K.269, C:E.275 Water bridges: C:S.115, C:S.115, C:Y.259, C:K.269, C:R.271 Salt bridges: C:K.269, D:R.238 F6P.7: 13 residues within 4Å: Chain C: R.238 Chain D: D.113, G.114, N.206, Y.239, G.241, S.242, L.243, Y.257, Y.259, K.269, L.270, E.275 14 PLIP interactions: 13 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:D.113, D:G.114, D:N.206, D:Y.239, D:L.243, D:K.269, D:E.275 Water bridges: D:S.115, D:S.115, D:Y.259, D:K.269, D:R.271 Salt bridges: D:K.269, C:R.238

4 x PEP: PHOSPHOENOLPYRUVATE(Non-functional Binders)

PEP.2: 13 residues within 4Å: Chain A: T.3, L.4, G.5, K.30, K.34, G.185, V.186 Chain C: S.27, K.30, L.31, K.34, R.80 Ligands: PEP.6 12 PLIP interactions: 4 interactions with chain C, 8 interactions with chain A Hydrophobic interactions: C:L.31 Salt bridges: C:K.30, C:K.34, C:R.80, A:K.30, A:K.30, A:K.34 Hydrogen bonds: A:T.3, A:L.4, A:G.5 Water bridges: A:K.30, A:F.187 PEP.4: 13 residues within 4Å: Chain B: T.3, L.4, G.5, K.30, K.34, G.185, V.186 Chain D: S.27, K.30, L.31, K.34, R.80 Ligands: PEP.8 12 PLIP interactions: 8 interactions with chain B, 4 interactions with chain D Hydrogen bonds: B:T.3, B:L.4, B:G.5 Water bridges: B:K.30, B:F.187 Salt bridges: B:K.30, B:K.30, B:K.34, D:K.30, D:K.34, D:R.80 Hydrophobic interactions: D:L.31 PEP.6: 13 residues within 4Å: Chain A: S.27, K.30, L.31, K.34, R.80 Chain C: T.3, L.4, G.5, K.30, K.34, G.185, V.186 Ligands: PEP.2 12 PLIP interactions: 8 interactions with chain C, 4 interactions with chain A Hydrogen bonds: C:T.3, C:L.4, C:G.5 Water bridges: C:K.30, C:F.187 Salt bridges: C:K.30, C:K.30, C:K.34, A:K.30, A:K.34, A:R.80 Hydrophobic interactions: A:L.31 PEP.8: 13 residues within 4Å: Chain B: S.27, K.30, L.31, K.34, R.80 Chain D: T.3, L.4, G.5, K.30, K.34, G.185, V.186 Ligands: PEP.4 12 PLIP interactions: 8 interactions with chain D, 4 interactions with chain B Hydrogen bonds: D:T.3, D:L.4, D:G.5 Water bridges: D:K.30, D:F.187 Salt bridges: D:K.30, D:K.30, D:K.34, B:K.30, B:K.34, B:R.80 Hydrophobic interactions: B:L.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hines, J.K. et al., Structures of activated fructose-1,6-bisphosphatase from Escherichia coli. Coordinate regulation of bacterial metabolism and the conservation of the R-state. J.Biol.Chem. (2007)

Release Date

2007-03-06

Peptides

Fructose-1,6-bisphosphatase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Fructose-1,6-bisphosphatase

Related Entries With Identical Sequence