SMTL ID : 2ox8.3 (3 other biounits)

Human Scavenger Receptor C-type Lectin carbohydrate-recognition domain.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.8 Ligands: CL.3, CL.4 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.8 ZN.2: 5 residues within 4Å: Chain A: Y.17, F.42, E.48, E.129 Ligands: CL.5 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:F.42, A:E.48, A:E.129, A:E.129 ZN.9: 1 residues within 4Å: Chain A: H.98 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.98, H2O.1

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Ligands: ZN.1 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: H.8 Ligands: ZN.1 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain A: K.15, F.42, E.48, E.129 Ligands: ZN.2 Ligand excluded by PLIP

3 x CA: CALCIUM ION(Non-covalent)

CA.6: 5 residues within 4Å: Chain A: D.68, E.72, N.95, E.104, D.105 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.72, A:E.104, A:D.105 CA.7: 5 residues within 4Å: Chain A: Q.92, D.94, E.104, N.116, D.117 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.94, A:E.104, A:D.117, A:D.117 CA.8: 3 residues within 4Å: Chain A: E.72, P.102, D.105 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.72, A:D.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feinberg, H. et al., Scavenger receptor C-type lectin binds to the leukocyte cell surface glycan Lewis(x) by a novel mechanism. J.Biol.Chem. (2007)

Release Date

2007-04-03

Peptides

Scavenger receptor with C-type lectin type I: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Scavenger receptor with C-type lectin type I

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