SMTL ID : 2ox9.1 (3 other biounits)

Mouse Scavenger Receptor C-type Lectin carbohydrate-recognition domain.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x NAG- FUC- GAL: alpha-L-fucopyranose-(1-3)-[beta-D-galactopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-FUC-GAL.1: 8 residues within 4Å: Chain A: K.89, Q.92, D.94, W.96, E.104, N.116, D.117 Ligands: CA.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.89, A:Q.92, A:Q.92, A:E.104, A:N.116 Water bridges: A:E.104

4 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: D.68, E.72, N.95, E.104, D.105 Ligands: CA.4 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.68, A:D.68, A:E.72, A:E.104, H2O.1 CA.3: 6 residues within 4Å: Chain A: Q.92, D.94, E.104, N.116, D.117 Ligands: NAG-FUC-GAL.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.94, A:E.104, A:D.117, A:D.117 CA.4: 5 residues within 4Å: Chain A: E.72, N.95, P.102, D.105 Ligands: CA.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.72, A:P.102, A:D.105, H2O.1, H2O.1 CA.5: 4 residues within 4Å: Chain A: F.42, N.44, E.48, E.129 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.48, A:E.48, A:E.129, A:E.129, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feinberg, H. et al., Scavenger receptor C-type lectin binds to the leukocyte cell surface glycan Lewis(x) by a novel mechanism. J.Biol.Chem. (2007)

Release Date

2007-04-03

Peptides

Collectin placenta 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Collectin placenta 1

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