SMTL ID : 2oxm.1

Crystal structure of a UNG2/modified DNA complex that represent a stabilized short-lived extrahelical state in ezymatic DNA base flipping

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x DT- DG- DT- DT- DA- DT- DC- DT- DT: DNA (5'-D(*TP*GP*TP*TP*AP*TP*CP*TP*T)-3')(Non-covalent)

DT-DG-DT-DT-DA-DT-DC-DT-DT.1: 24 residues within 4Å: Chain A: A.1, A.2, A.3, G.4, A.5, T.6, N.7, A.8, C.9, A.10 Chain B: Q.63, H.67, P.87, H.131, A.133, G.165, S.166, A.186, H.187, S.189, P.190, L.191, S.192, R.195 2 PLIP interactions: 2 interactions with chain B Water bridges: B:K.94 Salt bridges: B:K.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parker, J.B. et al., Enzymatic capture of an extrahelical thymine in the search for uracil in DNA. Nature (2007)

Release Date

2007-10-30

Peptides

Uracil-DNA glycosylase: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
A

Uracil-DNA glycosylase

Related Entries With Identical Sequence