SMTL ID : 2oze.1

The Crystal structure of Delta protein of pSM19035 from Streptoccocus pyogenes

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: S.51 Ligands: AGS.2 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.51, H2O.4, H2O.10 MG.4: 2 residues within 4Å: Chain B: S.51 Ligands: AGS.5 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:S.51, H2O.14, H2O.20

2 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.2: 18 residues within 4Å: Chain A: K.45, G.46, G.47, V.48, G.49, K.50, S.51, K.52, P.164, Y.220, I.251, K.252, R.253, S.254, V.257, S.261, Y.279 Ligands: MG.1 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:G.47, A:V.48, A:G.49, A:K.50, A:S.51, A:K.52, A:Y.220, A:K.252, A:S.254, A:S.261, A:Y.279 Water bridges: A:K.50, A:S.51, A:S.51, A:K.52, A:K.52, A:D.74 Salt bridges: A:K.50 AGS.5: 18 residues within 4Å: Chain B: K.45, G.46, G.47, V.48, G.49, K.50, S.51, K.52, P.164, Y.220, I.251, K.252, R.253, S.254, V.257, S.261, Y.279 Ligands: MG.4 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:G.47, B:V.48, B:G.49, B:K.50, B:S.51, B:K.52, B:K.252, B:S.254, B:S.261, B:Y.279 Water bridges: B:K.50, B:S.51, B:K.52, B:K.52, B:D.74, B:T.78 Salt bridges: B:K.50

2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.3: 4 residues within 4Å: Chain A: S.134, W.135, T.136, N.139 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.136 EPE.6: 4 residues within 4Å: Chain B: S.134, W.135, T.136, N.139 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.136

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pratto, F. et al., Streptococcus pyogenes pSM19035 requires dynamic assembly of ATP-bound ParA and ParB on parS DNA during plasmid segregation. Nucleic Acids Res. (2008)

Release Date

2008-03-11

Peptides

Orf delta': AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Orf delta'