- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 12 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 6 residues within 4Å:- Chain A: A.27, R.92, P.299, L.300, R.309
- Ligands: EDO.9
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:L.300
- Water bridges: A:D.25, A:R.92, A:R.92
- Salt bridges: A:R.92, A:R.309
SO4.3: 8 residues within 4Å:- Chain A: R.221, R.234, N.244, K.279, M.294, P.299, I.301
- Ligands: ANP.6
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:N.244
- Water bridges: A:R.234, A:R.234
- Salt bridges: A:R.221, A:R.234, A:K.279
SO4.4: 5 residues within 4Å:- Chain A: E.303, H.304, V.305, E.306, E.307
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:H.304, A:E.306, A:E.307, A:E.307
- Salt bridges: A:H.304
SO4.5: 3 residues within 4Å:- Chain A: Y.96, R.105
- Chain B: R.105
12 PLIP interactions:7 interactions with chain A, 5 interactions with chain B- Hydrogen bonds: A:D.103, A:D.103
- Water bridges: A:Y.96, A:Y.96, A:R.105, A:R.105, B:Y.96, B:D.103, B:D.103, B:R.105
- Salt bridges: A:R.105, B:R.105
SO4.13: 5 residues within 4Å:- Chain B: A.27, R.92, P.299, L.300, R.309
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:L.300
- Water bridges: B:D.25, B:R.92
- Salt bridges: B:R.92, B:R.309
SO4.14: 8 residues within 4Å:- Chain B: R.221, R.234, N.244, K.279, M.294, P.299, I.301
- Ligands: ANP.15
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:N.244
- Salt bridges: B:R.221, B:R.234, B:K.279
SO4.20: 6 residues within 4Å:- Chain C: A.27, R.92, P.299, L.300, R.309
- Ligands: EDO.27
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:L.300
- Water bridges: C:D.25, C:R.92, C:R.92
- Salt bridges: C:R.92, C:R.309
SO4.21: 8 residues within 4Å:- Chain C: R.221, R.234, N.244, K.279, M.294, P.299, I.301
- Ligands: ANP.24
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:N.244
- Water bridges: C:R.234, C:R.234
- Salt bridges: C:R.221, C:R.234, C:K.279
SO4.22: 5 residues within 4Å:- Chain C: E.303, H.304, V.305, E.306, E.307
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:H.304, C:E.306, C:E.307
- Salt bridges: C:H.304
SO4.23: 3 residues within 4Å:- Chain C: Y.96, R.105
- Chain D: R.105
10 PLIP interactions:4 interactions with chain D, 6 interactions with chain C- Water bridges: D:D.103, D:R.105, D:R.105, C:Y.96, C:R.105, C:R.105, C:R.105
- Salt bridges: D:R.105, C:R.105
- Hydrogen bonds: C:D.103
SO4.31: 5 residues within 4Å:- Chain D: A.27, R.92, P.299, L.300, R.309
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:L.300
- Water bridges: D:D.25, D:R.92
- Salt bridges: D:R.92, D:R.309
SO4.32: 8 residues within 4Å:- Chain D: R.221, R.234, N.244, K.279, M.294, P.299, I.301
- Ligands: ANP.33
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:N.244
- Salt bridges: D:R.221, D:R.234, D:K.279
- 4 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)
ANP.6: 22 residues within 4Å:- Chain A: K.131, V.173, K.175, A.179, H.180, A.181, G.182, K.185, E.211, A.212, F.213, I.214, D.219, W.241, K.242, A.243, N.244, K.279, V.281, I.291, E.292
- Ligands: SO4.3
20 PLIP interactions:20 interactions with chain A- Hydrogen bonds: A:K.131, A:K.175, A:A.181, A:G.182, A:K.185, A:E.211, A:E.211, A:I.214, A:D.219, A:A.243, A:N.244, A:K.279, A:K.279, A:K.279
- Water bridges: A:H.94, A:E.292
- Salt bridges: A:K.131, A:K.175, A:K.185, A:K.279
ANP.15: 23 residues within 4Å:- Chain B: K.131, V.173, K.175, A.179, H.180, A.181, G.182, K.185, E.211, A.212, F.213, I.214, D.219, R.234, W.241, K.242, A.243, N.244, K.279, V.281, I.291, E.292
- Ligands: SO4.14
22 PLIP interactions:22 interactions with chain B- Hydrogen bonds: B:K.131, B:K.175, B:A.181, B:G.182, B:K.185, B:E.211, B:I.214, B:D.219, B:R.234, B:A.243, B:N.244, B:N.244, B:K.279, B:K.279, B:K.279
- Water bridges: B:H.94, B:H.180, B:E.292
- Salt bridges: B:K.131, B:K.175, B:K.185, B:K.279
ANP.24: 22 residues within 4Å:- Chain C: K.131, V.173, K.175, A.179, H.180, A.181, G.182, K.185, E.211, A.212, F.213, I.214, D.219, W.241, K.242, A.243, N.244, K.279, V.281, I.291, E.292
- Ligands: SO4.21
21 PLIP interactions:21 interactions with chain C- Hydrogen bonds: C:K.131, C:K.175, C:H.180, C:A.181, C:G.182, C:K.185, C:E.211, C:I.214, C:D.219, C:A.243, C:N.244, C:K.279, C:K.279, C:K.279
- Water bridges: C:H.94, C:D.219, C:E.292
- Salt bridges: C:K.131, C:K.175, C:K.185, C:K.279
ANP.33: 23 residues within 4Å:- Chain D: K.131, V.173, K.175, A.179, H.180, A.181, G.182, K.185, E.211, A.212, F.213, I.214, D.219, R.234, W.241, K.242, A.243, N.244, K.279, V.281, I.291, E.292
- Ligands: SO4.32
24 PLIP interactions:24 interactions with chain D- Hydrogen bonds: D:K.131, D:K.175, D:H.180, D:A.181, D:G.182, D:K.185, D:E.211, D:E.211, D:I.214, D:D.219, D:R.234, D:A.243, D:N.244, D:N.244, D:K.279, D:K.279, D:K.279
- Water bridges: D:H.94, D:D.219, D:E.292
- Salt bridges: D:K.131, D:K.175, D:K.185, D:K.279
- 16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.7: 5 residues within 4Å:- Chain A: V.153, E.154, A.212, Y.289
- Ligands: EDO.11
Ligand excluded by PLIPEDO.8: 5 residues within 4Å:- Chain A: I.186, K.187, V.188, E.189, D.193
Ligand excluded by PLIPEDO.9: 5 residues within 4Å:- Chain A: R.92, H.94, S.297, P.299
- Ligands: SO4.2
Ligand excluded by PLIPEDO.10: 6 residues within 4Å:- Chain A: L.192, D.193, D.196
- Chain D: I.186, K.187, W.241
Ligand excluded by PLIPEDO.11: 7 residues within 4Å:- Chain A: F.142, P.147, P.151, L.152, E.154, Y.289
- Ligands: EDO.7
Ligand excluded by PLIPEDO.16: 7 residues within 4Å:- Chain B: F.142, P.147, P.151, L.152, E.154, Y.289
- Ligands: EDO.17
Ligand excluded by PLIPEDO.17: 5 residues within 4Å:- Chain B: V.153, E.154, A.212, Y.289
- Ligands: EDO.16
Ligand excluded by PLIPEDO.18: 5 residues within 4Å:- Chain A: Q.137, K.140
- Chain B: Q.112, S.121, Y.123
Ligand excluded by PLIPEDO.25: 5 residues within 4Å:- Chain C: V.153, E.154, A.212, Y.289
- Ligands: EDO.29
Ligand excluded by PLIPEDO.26: 5 residues within 4Å:- Chain C: I.186, K.187, V.188, E.189, D.193
Ligand excluded by PLIPEDO.27: 5 residues within 4Å:- Chain C: R.92, H.94, S.297, P.299
- Ligands: SO4.20
Ligand excluded by PLIPEDO.28: 6 residues within 4Å:- Chain B: I.186, K.187, W.241
- Chain C: L.192, D.193, D.196
Ligand excluded by PLIPEDO.29: 7 residues within 4Å:- Chain C: F.142, P.147, P.151, L.152, E.154, Y.289
- Ligands: EDO.25
Ligand excluded by PLIPEDO.34: 7 residues within 4Å:- Chain D: F.142, P.147, P.151, L.152, E.154, Y.289
- Ligands: EDO.35
Ligand excluded by PLIPEDO.35: 5 residues within 4Å:- Chain D: V.153, E.154, A.212, Y.289
- Ligands: EDO.34
Ligand excluded by PLIPEDO.36: 5 residues within 4Å:- Chain C: Q.137, K.140
- Chain D: Q.112, S.121, Y.123
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Turnbull, A.P. et al., The crystal structure of human synapsin III (SYN3) in complex with AMPPNP. To be Published
- Release Date
- 2007-03-27
- Peptides
- Synapsin-3: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 4 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)
- 16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Turnbull, A.P. et al., The crystal structure of human synapsin III (SYN3) in complex with AMPPNP. To be Published
- Release Date
- 2007-03-27
- Peptides
- Synapsin-3: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B