SMTL ID : 2p0k.2 (1 other biounit)

Crystal structure of SCMH1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-trimer

Ligands

18 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: N.89, K.92 Ligand excluded by PLIP CL.2: 1 residues within 4Å: Chain A: N.119 Ligand excluded by PLIP CL.3: 1 residues within 4Å: Chain A: G.168 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: F.21, P.134 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: K.37, D.67 Ligands: PO4.7 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain A: M.112 Chain B: M.112 Chain C: M.112 Ligands: CL.14, CL.22 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain B: N.89, K.92 Ligand excluded by PLIP CL.10: 1 residues within 4Å: Chain B: N.119 Ligand excluded by PLIP CL.11: 1 residues within 4Å: Chain B: G.168 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain B: F.21, P.134 Ligand excluded by PLIP CL.13: 3 residues within 4Å: Chain B: K.37, D.67 Ligands: PO4.15 Ligand excluded by PLIP CL.14: 5 residues within 4Å: Chain A: M.112 Chain B: M.112 Chain C: M.112 Ligands: CL.6, CL.22 Ligand excluded by PLIP CL.17: 2 residues within 4Å: Chain C: N.89, K.92 Ligand excluded by PLIP CL.18: 1 residues within 4Å: Chain C: N.119 Ligand excluded by PLIP CL.19: 1 residues within 4Å: Chain C: G.168 Ligand excluded by PLIP CL.20: 2 residues within 4Å: Chain C: F.21, P.134 Ligand excluded by PLIP CL.21: 3 residues within 4Å: Chain C: K.37, D.67 Ligands: PO4.23 Ligand excluded by PLIP CL.22: 5 residues within 4Å: Chain A: M.112 Chain B: M.112 Chain C: M.112 Ligands: CL.6, CL.14 Ligand excluded by PLIP

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.7: 5 residues within 4Å: Chain A: D.67, G.68, R.104, F.113 Ligands: CL.5 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.67, A:G.68 Water bridges: A:R.104, A:R.104 Salt bridges: A:R.104 PO4.8: 3 residues within 4Å: Chain A: M.123, A.124, P.125 No protein-ligand interaction detected (PLIP) PO4.15: 5 residues within 4Å: Chain B: D.67, G.68, R.104, F.113 Ligands: CL.13 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.67, B:G.68 Water bridges: B:R.104, B:R.104 Salt bridges: B:R.104 PO4.16: 3 residues within 4Å: Chain B: M.123, A.124, P.125 No protein-ligand interaction detected (PLIP) PO4.23: 5 residues within 4Å: Chain C: D.67, G.68, R.104, F.113 Ligands: CL.21 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:D.67, C:G.68 Water bridges: C:R.104, C:R.104 Salt bridges: C:R.104 PO4.24: 3 residues within 4Å: Chain C: M.123, A.124, P.125 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Herzanych, N. et al., Structure of SCMH1. To be Published

Release Date

2007-03-27

Peptides

Polycomb protein SCMH1: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Polycomb protein SCMH1

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