SMTL ID : 2p0s.1

Structural Genomics, the crystal structure of a putative ABC transporter domain from Porphyromonas gingivalis W83

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 1 residues within 4Å: Chain A: D.62 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:D.62, H2O.19, H2O.71, H2O.84, H2O.85, H2O.86

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 6 residues within 4Å: Chain A: E.30, S.81, H.85, R.88 Chain B: H.85, R.88 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:R.88, A:H.85 Salt bridges: B:H.85, A:H.85

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 6 residues within 4Å: Chain A: R.44, Y.75 Chain B: K.124, W.125, S.126, E.127 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.126 FMT.4: 3 residues within 4Å: Chain A: I.116, E.117 Chain B: P.67 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.117 Water bridges: A:E.117, A:S.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of a putative ABC transporter domain from Porphyromonas gingivalis W83. To be Published

Release Date

2007-04-03

Peptides

ABC transporter, permease protein, putative: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ABC transporter, permease protein, putative