SMTL ID : 2p18.1

Crystal structure of the Leishmania infantum glyoxalase II

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: D.96, H.97, D.180, H.226 Ligands: ZN.2, ACY.4 5 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: A:D.96, A:H.97, A:D.180, H2O.1, ACY.4 ZN.2: 6 residues within 4Å: Chain A: H.92, H.94, H.155, D.180 Ligands: ZN.1, ACY.4 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.92, A:H.94, A:H.155, A:D.180, H2O.1

1 x SPD: SPERMIDINE(Non-covalent)

SPD.3: 10 residues within 4Å: Chain A: I.187, G.188, A.189, Y.228, F.232, F.235, F.282, L.306, Y.307, A.309 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.189, A:F.232, A:F.232 Hydrogen bonds: A:A.309

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.4: 9 residues within 4Å: Chain A: H.94, D.96, H.155, D.180, F.191, H.226, Y.228 Ligands: ZN.1, ZN.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.228 Salt bridges: A:H.94, A:H.155, A:H.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Silva, M.S. et al., Catalysis and Structural Properties of Leishmania infantum Glyoxalase II: Trypanothione Specificity and Phylogeny. Biochemistry (2008)

Release Date

2008-01-15

Peptides

Glyoxalase II: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glyoxalase II

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