SMTL ID : 2p1f.1

Human UMP Synthase (C-terminal Domain-Orotidine 5'-Monophosphate Decarboxylase)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: Q.241, Y.243, G.261, R.262 Chain B: I.129 Ligands: GOL.3 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.241, A:Y.243, A:G.261, A:R.262 Water bridges: A:V.230, A:G.263 Salt bridges: A:R.262 SO4.7: 6 residues within 4Å: Chain A: I.129 Chain B: Q.241, Y.243, G.261, R.262 Ligands: GOL.9 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:Q.241, B:Y.243, B:Y.243, B:G.261, B:R.262 Water bridges: B:V.230, B:G.263 Salt bridges: B:R.262

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: K.125, P.228 Chain B: D.128 Ligands: GOL.3 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.128, A:K.125 NA.8: 4 residues within 4Å: Chain A: D.128 Chain B: K.125, P.228 Ligands: GOL.9 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:K.125, A:D.128

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 11 residues within 4Å: Chain A: S.68, D.70, K.92, H.94, D.123, G.261 Chain B: D.128, I.129, T.132 Ligands: SO4.1, NA.2 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:D.128, B:T.132, A:S.68, A:K.92 GOL.4: 3 residues within 4Å: Chain A: Q.242, N.244, R.253 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.242, A:N.244, A:R.253, A:R.253 Water bridges: A:Q.242, A:Y.243 GOL.5: 4 residues within 4Å: Chain A: S.37, G.39, A.40, Q.59 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.37, A:S.37, A:Q.59 GOL.6: 2 residues within 4Å: Chain A: G.191, R.195 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.195, A:R.195 Water bridges: A:G.191, A:G.191, A:D.192, A:D.192 GOL.9: 11 residues within 4Å: Chain A: D.128, I.129, T.132 Chain B: S.68, D.70, K.92, H.94, D.123, G.261 Ligands: SO4.7, NA.8 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:D.128, A:T.132, A:T.132, B:S.68, B:K.92 GOL.10: 3 residues within 4Å: Chain B: Q.242, N.244, R.253 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Q.242, B:N.244, B:R.253, B:R.253 Water bridges: B:Q.242, B:Y.243 GOL.11: 4 residues within 4Å: Chain B: S.37, G.39, A.40, Q.59 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.37, B:S.37, B:Q.59 Water bridges: B:E.43 GOL.12: 2 residues within 4Å: Chain B: G.191, R.195 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:R.195, B:R.195 Water bridges: B:G.191, B:G.191, B:D.192, B:D.192

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y. et al., Human UMP Synthase (C-terminal Domain-Orotidine 5'-Monophosphate Decarboxylase). TO BE PUBLISHED

Release Date

2007-04-03

Peptides

Uridine 5'-monophosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Uridine 5'-monophosphate synthase

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