SMTL ID : 2p2d.1

Crystal Structure and Allosteric Regulation of the Cytoplasmic Escherichia coli L-Asparaginase I

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

homo-tetramer

Ligands

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: S.122, L.125, N.127, L.128, P.216, H.217, R.351 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.122, A:N.127, A:L.128, A:N.165, A:P.216 Water bridges: A:G.218 GOL.2: 8 residues within 4Å: Chain A: R.260, L.290, T.291, C.293, M.294, M.320, T.321, V.322 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.260, A:M.294 Water bridges: A:N.196, A:N.196, A:T.291, A:V.322 GOL.3: 7 residues within 4Å: Chain A: G.33, M.78, D.79, S.80, G.110, T.111, D.112 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.33, A:T.34, A:M.78, A:S.80, A:T.111, A:D.112, A:D.112 Water bridges: A:G.110, A:T.111, A:T.111 GOL.4: 8 residues within 4Å: Chain B: S.122, L.125, N.127, L.128, A.215, P.216, H.217, R.351 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:L.125, B:N.127, B:L.128, B:N.165, B:P.216 Water bridges: B:G.218 GOL.5: 10 residues within 4Å: Chain B: P.195, N.196, T.291, C.293, M.294, S.295, G.296, D.319, M.320, T.321 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:N.196, B:M.294, B:G.296, B:M.320 Water bridges: B:T.291, B:V.322 GOL.6: 7 residues within 4Å: Chain B: G.33, T.34, D.79, S.80, G.110, T.111, D.112 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.34, B:T.34, B:S.80, B:T.111, B:D.112 GOL.7: 9 residues within 4Å: Chain C: P.195, N.196, T.291, M.294, S.295, G.296, D.319, M.320, T.321 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:N.196, C:M.294, C:G.296, C:M.320 Water bridges: C:V.322, C:V.322 GOL.8: 8 residues within 4Å: Chain C: S.122, L.125, N.127, L.128, N.165, P.216, H.217, R.351 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:N.127, C:L.128, C:L.128, C:P.216 GOL.9: 8 residues within 4Å: Chain C: G.33, T.34, M.78, D.79, S.80, G.110, T.111, D.112 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:G.33, C:T.34, C:T.34, C:T.34, C:M.78, C:S.80, C:T.111, C:T.111, C:D.112, C:D.112 Water bridges: C:G.110 GOL.10: 7 residues within 4Å: Chain D: S.122, L.125, N.127, L.128, P.216, H.217, R.351 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:S.122, D:N.127, D:L.128, D:L.128, D:P.216 GOL.11: 10 residues within 4Å: Chain D: P.195, N.196, T.291, C.293, M.294, S.295, G.296, D.319, M.320, T.321 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:N.196, D:G.296 Water bridges: D:T.182, D:V.322 GOL.12: 7 residues within 4Å: Chain D: G.33, M.78, D.79, S.80, G.110, T.111, D.112 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:G.33, D:M.78, D:S.80, D:T.111, D:D.112, D:D.112 Water bridges: D:T.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yun, M.-K. et al., Crystal Structure and Allosteric Regulation of the Cytoplasmic Escherichia colil-Asparaginase I. J.Mol.Biol. (2007)

Release Date

2007-05-15

Peptides

L-ASPARAGINASE I: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

L-ASPARAGINASE I

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