SMTL ID : 2p4q.1

Crystal Structure Analysis of Gnd1 in Saccharomyces cerevisiae

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.37 Å

Oligo State

homo-dimer

Ligands

4 x FLC: CITRATE ANION(Non-covalent)

FLC.1: 11 residues within 4Å: Chain A: E.197, Y.198, M.201, Q.266, K.267, T.269, R.294 Chain B: R.454, F.457, H.460 Ligands: FLC.2 10 PLIP interactions: 5 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:E.197, A:K.267, B:R.454, B:H.460 Salt bridges: A:K.267, A:R.294, A:R.294, B:R.454, B:R.454, B:H.460 FLC.2: 13 residues within 4Å: Chain A: N.110, S.136, G.137, G.138, K.190, H.193, N.194, E.197, I.374 Chain B: F.457, G.458, H.460 Ligands: FLC.1 9 PLIP interactions: 7 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:G.137, A:G.138, A:N.194, A:E.197 Salt bridges: A:K.190, A:K.190, A:H.193, B:H.460 Hydrophobic interactions: B:F.457 FLC.3: 11 residues within 4Å: Chain A: R.454, F.457, H.460 Chain B: E.197, Y.198, M.201, Q.266, K.267, T.269, R.294 Ligands: FLC.4 11 PLIP interactions: 7 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:E.197, B:E.197, B:Y.198, B:K.267, A:R.454 Salt bridges: B:K.267, B:R.294, B:R.294, A:R.454, A:R.454, A:H.460 FLC.4: 13 residues within 4Å: Chain A: F.457, G.458, H.460 Chain B: N.110, S.136, G.137, G.138, K.190, H.193, N.194, E.197, I.374 Ligands: FLC.3 9 PLIP interactions: 2 interactions with chain A, 7 interactions with chain B Hydrophobic interactions: A:F.457 Salt bridges: A:H.460, B:K.190, B:K.190, B:H.193 Hydrogen bonds: B:G.137, B:G.138, B:N.194, B:E.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

He, W. et al., Crystal structure of Saccharomyces cerevisiae 6-phosphogluconate dehydrogenase Gnd1. Bmc Struct.Biol. (2007)

Release Date

2007-07-24

Peptides

6-phosphogluconate dehydrogenase, decarboxylating 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

6-phosphogluconate dehydrogenase, decarboxylating 1