SMTL ID : 2p4y.1

Crystal structure of human PPAR-gamma-ligand binding domain complexed with an indole-based modulator

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

2 x C03: (2R)-2-(4-CHLORO-3-{[3-(6-METHOXY-1,2-BENZISOXAZOL-3-YL)-2-METHYL-6-(TRIFLUOROMETHOXY)-1H-INDOL-1-YL]METHYL}PHENOXY)PROPANOIC ACID(Non-covalent)

C03.1: 23 residues within 4Å: Chain A: F.26, I.81, G.84, C.85, R.88, S.89, A.92, I.96, I.126, Y.127, M.129, L.130, L.133, V.139, L.140, I.141, S.142, L.153, F.163, M.164, K.167, H.249 Ligands: TRS.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.81, A:R.88, A:R.88, A:A.92, A:I.126, A:M.129, A:L.130, A:L.133, A:I.141 Hydrogen bonds: A:S.142 C03.3: 22 residues within 4Å: Chain B: F.26, I.81, C.85, R.88, S.89, A.92, E.95, I.96, I.126, Y.127, M.129, L.130, L.133, V.139, L.140, I.141, S.142, M.148, L.153, F.163, M.164, H.249 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:I.81, B:R.88, B:I.126, B:M.129, B:L.133, B:V.139, B:I.141 Hydrogen bonds: B:S.142

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 12 residues within 4Å: Chain A: F.82, C.85, Q.86, S.89, H.123, F.163, H.249, L.253, L.265, L.269, Y.273 Ligands: C03.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.86, A:S.89, A:H.123, A:Y.273

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Einstein, M. et al., The differential interactions of peroxisome proliferator-activated receptor gamma ligands with Tyr473 is a physical basis for their unique biological activities. Mol.Pharmacol. (2008)

Release Date

2008-01-08

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

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