SMTL ID : 2p5r.1

Crystal structure of the poplar glutathione peroxidase 5 in the oxidized form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

homo-dimer

Ligands

5 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: H.13, D.26, S.28 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.13, A:D.26, A:S.28, H2O.3, H2O.3 CA.2: 1 residues within 4Å: Chain A: E.78 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.78, H2O.4 CA.3: 3 residues within 4Å: Chain A: D.148 Chain B: T.153 Ligands: CA.4 3 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:D.148, B:T.153, H2O.3 CA.4: 3 residues within 4Å: Chain A: D.148, D.162 Ligands: CA.3 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.148, H2O.5 CA.5: 3 residues within 4Å: Chain B: N.74, Q.75, D.106 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koh, C.S. et al., Crystal Structures of a Poplar Thioredoxin Peroxidase that Exhibits the Structure of Glutathione Peroxidases: Insights into Redox-driven Conformational Changes. J.Mol.Biol. (2007)

Release Date

2007-07-24

Peptides

Glutathione peroxidase 5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutathione peroxidase 5

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