SMTL ID : 2p5s.1

RAB domain of human RASEF in complex with GDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 19 residues within 4Å: Chain A: D.36, A.37, A.38, V.39, G.40, K.41, S.42, S.43, F.53, R.54, A.85, E.88, N.141, K.142, D.144, I.145, S.177, A.178, K.179 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:D.36, A:A.38, A:V.39, A:G.40, A:K.41, A:S.42, A:S.42, A:S.43, A:S.43, A:R.54, A:N.141, A:K.142, A:K.142, A:A.178, A:K.179 Water bridges: A:G.86, A:E.88 Salt bridges: A:K.41, A:D.144 pi-Stacking: A:F.53, A:F.53 GDP.3: 17 residues within 4Å: Chain B: D.36, A.37, A.38, V.39, G.40, K.41, S.42, S.43, F.53, A.85, N.141, K.142, D.144, I.145, S.177, A.178, K.179 21 PLIP interactions: 21 interactions with chain B Hydrogen bonds: B:D.36, B:A.38, B:V.39, B:G.40, B:K.41, B:S.42, B:S.43, B:S.43, B:R.54, B:N.141, B:K.142, B:K.142, B:A.178, B:K.179 Water bridges: B:S.42, B:S.42, B:E.88 Salt bridges: B:K.41, B:D.144 pi-Stacking: B:F.53, B:F.53

3 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 3 residues within 4Å: Chain A: S.182, N.183, E.186 No protein-ligand interaction detected (PLIP) UNX.4: 5 residues within 4Å: Chain B: S.43, M.46, R.47, E.52, F.53 No protein-ligand interaction detected (PLIP) UNX.5: 5 residues within 4Å: Chain B: A.143, D.144, I.145, R.146, D.147 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, H. et al., RAB domain of human RASEF in complex with GDP. To be Published

Release Date

2007-03-27

Peptides

RAS and EF-hand domain containing: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

RAS and EF-hand domain containing